diff options
Diffstat (limited to 'var/spack/repos/builtin/packages/bismark/package.py')
| -rw-r--r-- | var/spack/repos/builtin/packages/bismark/package.py | 36 |
1 files changed, 18 insertions, 18 deletions
diff --git a/var/spack/repos/builtin/packages/bismark/package.py b/var/spack/repos/builtin/packages/bismark/package.py index dd44817a21..66b4bdeb86 100644 --- a/var/spack/repos/builtin/packages/bismark/package.py +++ b/var/spack/repos/builtin/packages/bismark/package.py @@ -11,26 +11,26 @@ class Bismark(Package): methylation states""" homepage = "https://www.bioinformatics.babraham.ac.uk/projects/bismark" - url = "https://github.com/FelixKrueger/Bismark/archive/0.23.0.tar.gz" + url = "https://github.com/FelixKrueger/Bismark/archive/0.23.0.tar.gz" - version('0.23.0', sha256='ea1625808487c1442dbf825d9cbe5c0cbc37ea5bd1460f59e1e0ccc80cc01c9e') - version('0.19.0', sha256='91707737f96a0574956a282b635abad7560e7d90bee188a67a7807b2470deae2') - version('0.18.2', sha256='83391c5b5af33047178e7774ac25f5a69ce9315c13ae02f016baf7c50b73e702') + version("0.23.0", sha256="ea1625808487c1442dbf825d9cbe5c0cbc37ea5bd1460f59e1e0ccc80cc01c9e") + version("0.19.0", sha256="91707737f96a0574956a282b635abad7560e7d90bee188a67a7807b2470deae2") + version("0.18.2", sha256="83391c5b5af33047178e7774ac25f5a69ce9315c13ae02f016baf7c50b73e702") - depends_on('bowtie2', type='run') - depends_on('perl', type='run') - depends_on('samtools', type='run') + depends_on("bowtie2", type="run") + depends_on("perl", type="run") + depends_on("samtools", type="run") def install(self, spec, prefix): mkdirp(prefix.bin) - install('bam2nuc', prefix.bin) - install('bismark', prefix.bin) - install('bismark_genome_preparation', prefix.bin) - install('bismark_methylation_extractor', prefix.bin) - install('bismark2bedGraph', prefix.bin) - install('bismark2report', prefix.bin) - install('bismark2summary', prefix.bin) - install('coverage2cytosine', prefix.bin) - install('deduplicate_bismark', prefix.bin) - install('filter_non_conversion', prefix.bin) - install('NOMe_filtering', prefix.bin) + install("bam2nuc", prefix.bin) + install("bismark", prefix.bin) + install("bismark_genome_preparation", prefix.bin) + install("bismark_methylation_extractor", prefix.bin) + install("bismark2bedGraph", prefix.bin) + install("bismark2report", prefix.bin) + install("bismark2summary", prefix.bin) + install("coverage2cytosine", prefix.bin) + install("deduplicate_bismark", prefix.bin) + install("filter_non_conversion", prefix.bin) + install("NOMe_filtering", prefix.bin) |