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-rw-r--r--var/spack/repos/builtin/packages/bowtie2/bowtie2-2.5.patch16
1 files changed, 16 insertions, 0 deletions
diff --git a/var/spack/repos/builtin/packages/bowtie2/bowtie2-2.5.patch b/var/spack/repos/builtin/packages/bowtie2/bowtie2-2.5.patch
new file mode 100644
index 0000000000..290be39c73
--- /dev/null
+++ b/var/spack/repos/builtin/packages/bowtie2/bowtie2-2.5.patch
@@ -0,0 +1,16 @@
+--- Makefile 2015-02-26 10:50:00.000000000 -0800
++++ Makefile.new 2015-07-29 18:03:59.891357399 -0700
+@@ -22,10 +22,10 @@
+ #
+
+ INC =
+-GCC_PREFIX = $(shell dirname `which gcc`)
++GCC_PREFIX =
+ GCC_SUFFIX =
+-CC = $(GCC_PREFIX)/gcc$(GCC_SUFFIX)
+-CPP = $(GCC_PREFIX)/g++$(GCC_SUFFIX)
++CC = cc
++CPP = c++
+ CXX = $(CPP)
+ HEADERS = $(wildcard *.h)
+ BOWTIE_MM = 1