diff options
Diffstat (limited to 'var/spack/repos/builtin/packages/bracken/package.py')
| -rw-r--r-- | var/spack/repos/builtin/packages/bracken/package.py | 46 |
1 files changed, 20 insertions, 26 deletions
diff --git a/var/spack/repos/builtin/packages/bracken/package.py b/var/spack/repos/builtin/packages/bracken/package.py index 3d26980341..73e2ae1cd3 100644 --- a/var/spack/repos/builtin/packages/bracken/package.py +++ b/var/spack/repos/builtin/packages/bracken/package.py @@ -14,47 +14,41 @@ class Bracken(Package): sequences from a metagenomics sample.""" homepage = "https://ccb.jhu.edu/software/bracken" - url = "https://github.com/jenniferlu717/Bracken/archive/1.0.0.tar.gz" + url = "https://github.com/jenniferlu717/Bracken/archive/1.0.0.tar.gz" - version('1.0.0', sha256='8ee736535ad994588339d94d0db4c0b1ba554a619f5f96332ee09f2aabdfe176') + version("1.0.0", sha256="8ee736535ad994588339d94d0db4c0b1ba554a619f5f96332ee09f2aabdfe176") - depends_on('perl', type=('build', 'link', 'run')) - depends_on('python@2.7:', type=('build', 'link', 'run')) - depends_on('perl-exporter-tiny') - depends_on('perl-list-moreutils') - depends_on('perl-parallel-forkmanager') + depends_on("perl", type=("build", "link", "run")) + depends_on("python@2.7:", type=("build", "link", "run")) + depends_on("perl-exporter-tiny") + depends_on("perl-list-moreutils") + depends_on("perl-parallel-forkmanager") def install(self, spec, prefix): mkdirp(prefix.bin) - install_tree('sample_data', prefix.sample_data) + install_tree("sample_data", prefix.sample_data) - filter_file( - r'#!/bin/env perl', - '#!/usr/bin/env perl', - 'count-kmer-abundances.pl' - ) + filter_file(r"#!/bin/env perl", "#!/usr/bin/env perl", "count-kmer-abundances.pl") filter_file( - r'#!/usr/bin/python', - '#!/usr/bin/env {0}'.format( - os.path.basename(self.spec['python'].command.path)), - 'est_abundance.py' + r"#!/usr/bin/python", + "#!/usr/bin/env {0}".format(os.path.basename(self.spec["python"].command.path)), + "est_abundance.py", ) filter_file( - r'#!/usr/bin/python', - '#!/usr/bin/env {0}'.format( - os.path.basename(self.spec['python'].command.path)), - 'generate_kmer_distribution.py' + r"#!/usr/bin/python", + "#!/usr/bin/env {0}".format(os.path.basename(self.spec["python"].command.path)), + "generate_kmer_distribution.py", ) files = ( - 'count-kmer-abundances.pl', - 'est_abundance.py', - 'generate_kmer_distribution.py', + "count-kmer-abundances.pl", + "est_abundance.py", + "generate_kmer_distribution.py", ) - chmod = which('chmod') + chmod = which("chmod") for name in files: install(name, prefix.bin) - chmod('+x', join_path(self.prefix.bin, name)) + chmod("+x", join_path(self.prefix.bin, name)) |