diff options
Diffstat (limited to 'var/spack/repos/builtin/packages/braker/package.py')
| -rw-r--r-- | var/spack/repos/builtin/packages/braker/package.py | 39 |
1 files changed, 13 insertions, 26 deletions
diff --git a/var/spack/repos/builtin/packages/braker/package.py b/var/spack/repos/builtin/packages/braker/package.py index 97fe9f710a..a295a4943a 100644 --- a/var/spack/repos/builtin/packages/braker/package.py +++ b/var/spack/repos/builtin/packages/braker/package.py @@ -1,27 +1,8 @@ -############################################################################## -# Copyright (c) 2013-2017, Lawrence Livermore National Security, LLC. -# Produced at the Lawrence Livermore National Laboratory. +# Copyright 2013-2018 Lawrence Livermore National Security, LLC and other +# Spack Project Developers. See the top-level COPYRIGHT file for details. # -# This file is part of Spack. -# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved. -# LLNL-CODE-647188 -# -# For details, see https://github.com/spack/spack -# Please also see the NOTICE and LICENSE files for our notice and the LGPL. -# -# This program is free software; you can redistribute it and/or modify -# it under the terms of the GNU Lesser General Public License (as -# published by the Free Software Foundation) version 2.1, February 1999. -# -# This program is distributed in the hope that it will be useful, but -# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF -# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and -# conditions of the GNU Lesser General Public License for more details. -# -# You should have received a copy of the GNU Lesser General Public -# License along with this program; if not, write to the Free Software -# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA -############################################################################## +# SPDX-License-Identifier: (Apache-2.0 OR MIT) + from spack import * @@ -30,12 +11,18 @@ class Braker(Package): that combines the advantages of GeneMark-ET and AUGUSTUS""" homepage = "http://exon.gatech.edu/braker1.html" - url = "http://bioinf.uni-greifswald.de/augustus/binaries/BRAKER1_v1.11.tar.gz" + url = "http://bioinf.uni-greifswald.de/augustus/binaries/BRAKER_v2.1.0.tar.gz" + list_url = "http://bioinf.uni-greifswald.de/augustus/binaries/old" - version('1.11', '297efe4cabdd239b710ac2c45d81f6a5') + version('2.1.0', '5f974abcceb9f96a11668fa20a6f6a56') + version('1.11', '297efe4cabdd239b710ac2c45d81f6a5', + url='http://bioinf.uni-greifswald.de/augustus/binaries/old/BRAKER1_v1.11.tar.gz') depends_on('perl', type=('build', 'run')) - depends_on('augustus') + depends_on('perl-scalar-util-numeric', type=('build', 'run')) + depends_on('perl-parallel-forkmanager', type=('build', 'run')) + depends_on('perl-file-which', type=('build', 'run')) + depends_on('augustus@3.2.3') depends_on('genemark-et') depends_on('bamtools') depends_on('samtools') |