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Diffstat (limited to 'var/spack/repos/builtin/packages/casper/package.py')
| -rw-r--r-- | var/spack/repos/builtin/packages/casper/package.py | 49 |
1 files changed, 49 insertions, 0 deletions
diff --git a/var/spack/repos/builtin/packages/casper/package.py b/var/spack/repos/builtin/packages/casper/package.py new file mode 100644 index 0000000000..170bdaecef --- /dev/null +++ b/var/spack/repos/builtin/packages/casper/package.py @@ -0,0 +1,49 @@ +############################################################################## +# Copyright (c) 2013-2017, Lawrence Livermore National Security, LLC. +# Produced at the Lawrence Livermore National Laboratory. +# +# This file is part of Spack. +# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved. +# LLNL-CODE-647188 +# +# For details, see https://github.com/spack/spack +# Please also see the NOTICE and LICENSE files for our notice and the LGPL. +# +# This program is free software; you can redistribute it and/or modify +# it under the terms of the GNU Lesser General Public License (as +# published by the Free Software Foundation) version 2.1, February 1999. +# +# This program is distributed in the hope that it will be useful, but +# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF +# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and +# conditions of the GNU Lesser General Public License for more details. +# +# You should have received a copy of the GNU Lesser General Public +# License along with this program; if not, write to the Free Software +# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA +############################################################################## +from spack import * +import distutils.dir_util + + +class Casper(MakefilePackage): + """CASPER (Context-Aware Scheme for Paired-End Read) is state-of-the art + merging tool in terms of accuracy and robustness. Using this + sophisticated merging method, we could get elongated reads from the + forward and reverse reads.""" + + homepage = "http://best.snu.ac.kr/casper/index.php?name=main" + url = "http://best.snu.ac.kr/casper/program/casper_v0.8.2.tar.gz" + + version('0.8.2', '9e83d32ff46b876f33eb1d7b545ec9c2') + + depends_on('jellyfish@2.2.3:') + depends_on('boost') + + conflicts('%gcc@7.1.0') + + def install(self, spec, prefix): + distutils.dir_util.copy_tree(".", prefix) + + def setup_environment(self, spack_env, run_env): + run_env.prepend_path('PATH', self.spec.prefix) |