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+##############################################################################
+# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC.
+# Produced at the Lawrence Livermore National Laboratory.
+#
+# This file is part of Spack.
+# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
+# LLNL-CODE-647188
+#
+# For details, see https://github.com/llnl/spack
+# Please also see the NOTICE and LICENSE files for our notice and the LGPL.
+#
+# This program is free software; you can redistribute it and/or modify
+# it under the terms of the GNU Lesser General Public License (as
+# published by the Free Software Foundation) version 2.1, February 1999.
+#
+# This program is distributed in the hope that it will be useful, but
+# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
+# conditions of the GNU Lesser General Public License for more details.
+#
+# You should have received a copy of the GNU Lesser General Public
+# License along with this program; if not, write to the Free Software
+# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
+##############################################################################
+from spack import *
+import distutils.dir_util
+import os
+
+
+class Chlorop(Package):
+ """Chlorop predicts the presence of chloroplast transit peptides
+ in protein sequences and the location of potential cTP cleavage
+ sites. You will need to obtain the tarball by visiting the
+ URL and completing the form. You can then either run spack
+ install with the tarball in the directory, or add it to a
+ mirror. You will need to set the CHLOROTMP environment variable
+ to the full path of the directory you want chlorop to use as
+ a temporary directory."""
+
+ homepage = "http://www.cbs.dtu.dk/services/ChloroP/"
+ url = "file://{0}/chlorop-1.1.Linux.tar.gz".format(os.getcwd())
+
+ version('1.1', 'eb0ba6b28dfa735163ad5fc70e30139e46e33f6ae27f87666a7167a4ac5f71d9')
+
+ depends_on('awk', type='run')
+ patch('chlorop.patch')
+
+ def install(self, spec, prefix):
+ os.rename('chlorop', 'bin/chlorop')
+ distutils.dir_util.copy_tree(".", prefix)
+
+ def setup_environment(self, spack_env, run_env):
+ run_env.set('CHLOROP', self.prefix)