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Diffstat (limited to 'var/spack/repos/builtin/packages/cleaveland4/package.py')
| -rw-r--r-- | var/spack/repos/builtin/packages/cleaveland4/package.py | 48 |
1 files changed, 48 insertions, 0 deletions
diff --git a/var/spack/repos/builtin/packages/cleaveland4/package.py b/var/spack/repos/builtin/packages/cleaveland4/package.py new file mode 100644 index 0000000000..505f800ac7 --- /dev/null +++ b/var/spack/repos/builtin/packages/cleaveland4/package.py @@ -0,0 +1,48 @@ +############################################################################## +# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC. +# Produced at the Lawrence Livermore National Laboratory. +# +# This file is part of Spack. +# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved. +# LLNL-CODE-647188 +# +# For details, see https://github.com/llnl/spack +# Please also see the NOTICE and LICENSE files for our notice and the LGPL. +# +# This program is free software; you can redistribute it and/or modify +# it under the terms of the GNU Lesser General Public License (as +# published by the Free Software Foundation) version 2.1, February 1999. +# +# This program is distributed in the hope that it will be useful, but +# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF +# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and +# conditions of the GNU Lesser General Public License for more details. +# +# You should have received a copy of the GNU Lesser General Public +# License along with this program; if not, write to the Free Software +# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA +############################################################################## +from spack import * + + +class Cleaveland4(Package): + """CleaveLand4: Analysis of degradome data to find sliced miRNA and siRNA + targets""" + + homepage = "https://github.com/MikeAxtell/CleaveLand4" + url = "https://github.com/MikeAxtell/CleaveLand4/archive/v4.4.tar.gz" + + version('4.4', 'cf62a1de715a612fc8bd5a62364e69db') + + depends_on('perl', type=('build', 'run')) + depends_on('perl-math-cdf', type=('build', 'run')) + depends_on('bowtie') + depends_on('viennarna') + depends_on('r', type=('build', 'run')) + depends_on('samtools') + + def install(self, spec, prefix): + mkdirp(prefix.bin) + install('CleaveLand4.pl', prefix.bin) + with working_dir('GSTAr_v1-0'): + install('GSTAr.pl', prefix.bin) |