diff options
Diffstat (limited to 'var/spack/repos/builtin/packages/cromwell/package.py')
| -rw-r--r-- | var/spack/repos/builtin/packages/cromwell/package.py | 23 |
1 files changed, 13 insertions, 10 deletions
diff --git a/var/spack/repos/builtin/packages/cromwell/package.py b/var/spack/repos/builtin/packages/cromwell/package.py index 9b904c65a4..236109e06c 100644 --- a/var/spack/repos/builtin/packages/cromwell/package.py +++ b/var/spack/repos/builtin/packages/cromwell/package.py @@ -10,19 +10,23 @@ from spack.package import * class Cromwell(Package): """Cromwell is a Workflow Management System geared towards scientific - workflows. + workflows. """ homepage = "https://cromwell.readthedocs.io/" - url = "https://github.com/broadinstitute/cromwell/releases/download/44/cromwell-44.jar" + url = "https://github.com/broadinstitute/cromwell/releases/download/44/cromwell-44.jar" - version('44', sha256='8b411673f6b3c835c6031db3094a7404b9a371133794046fd295719d61e56db0', expand=False) + version( + "44", + sha256="8b411673f6b3c835c6031db3094a7404b9a371133794046fd295719d61e56db0", + expand=False, + ) - depends_on('java@8', type='run') + depends_on("java@8", type="run") def install(self, spec, prefix): mkdirp(prefix.bin) - jar_file = 'cromwell-{0}.jar'.format(self.version) + jar_file = "cromwell-{0}.jar".format(self.version) install(jar_file, prefix.bin) # Set up a helper script to call java on the jar file, @@ -34,8 +38,7 @@ class Cromwell(Package): # Munge the helper script to explicitly point to java and the # jar file. - java = self.spec['java'].prefix.bin.java - kwargs = {'ignore_absent': False, 'backup': False, 'string': False} - filter_file('^java', java, script, **kwargs) - filter_file('cromwell.jar', join_path(prefix.bin, jar_file), - script, **kwargs) + java = self.spec["java"].prefix.bin.java + kwargs = {"ignore_absent": False, "backup": False, "string": False} + filter_file("^java", java, script, **kwargs) + filter_file("cromwell.jar", join_path(prefix.bin, jar_file), script, **kwargs) |