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Diffstat (limited to 'var/spack/repos/builtin/packages/discovardenovo/package.py')
| -rw-r--r-- | var/spack/repos/builtin/packages/discovardenovo/package.py | 26 |
1 files changed, 26 insertions, 0 deletions
diff --git a/var/spack/repos/builtin/packages/discovardenovo/package.py b/var/spack/repos/builtin/packages/discovardenovo/package.py new file mode 100644 index 0000000000..e3c86e314e --- /dev/null +++ b/var/spack/repos/builtin/packages/discovardenovo/package.py @@ -0,0 +1,26 @@ +# Copyright 2013-2018 Lawrence Livermore National Security, LLC and other +# Spack Project Developers. See the top-level COPYRIGHT file for details. +# +# SPDX-License-Identifier: (Apache-2.0 OR MIT) + +from spack import * + + +class Discovardenovo(AutotoolsPackage): + """DISCOVAR de novo is a large (and small) de novo genome assembler. + It quickly generates highly accurate and complete assemblies using the + same single library data as used by DISCOVAR. It currently doesn't + support variant calling, for that, please use DISCOVAR instead.""" + + homepage = "https://software.broadinstitute.org/software/discovar/blog/" + url = "ftp://ftp.broadinstitute.org/pub/crd/DiscovarDeNovo/latest_source_code/discovardenovo-52488.tar.gz" + + version('52488', '2b08c77b1b998d85be8048e5efb10358') + + # lots of compiler errors with GCC7, works with 4.8.5 + # and devs claim it works with 4.7 so I'm assuming 4.7-4.8'll work + conflicts('%gcc@5:') + conflicts('%gcc@:4.7.0') + + depends_on('samtools') + depends_on('jemalloc') |