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Diffstat (limited to 'var/spack/repos/builtin/packages/fasta/package.py')
-rw-r--r-- | var/spack/repos/builtin/packages/fasta/package.py | 58 |
1 files changed, 58 insertions, 0 deletions
diff --git a/var/spack/repos/builtin/packages/fasta/package.py b/var/spack/repos/builtin/packages/fasta/package.py new file mode 100644 index 0000000000..6a70762320 --- /dev/null +++ b/var/spack/repos/builtin/packages/fasta/package.py @@ -0,0 +1,58 @@ +# Copyright 2013-2018 Lawrence Livermore National Security, LLC and other +# Spack Project Developers. See the top-level COPYRIGHT file for details. +# +# SPDX-License-Identifier: (Apache-2.0 OR MIT) + +from spack import * + + +class Fasta(MakefilePackage): + """The FASTA programs find regions of local or global similarity + between Protein or DNA sequences, either by searching Protein or + DNA databases, or by identifying local duplications within a + sequence. Other programs provide information on the statistical + significance of an alignment. Like BLAST, FASTA can be used to + infer functional and evolutionary relationships between sequences + as well as help identify members of gene families. + """ + + homepage = "https://fasta.bioch.virginia.edu/fasta_www2/fasta_list2.shtml" + url = "https://github.com/wrpearson/fasta36/archive/fasta-v36.3.8g.tar.gz" + + version('36.3.8g', sha256='fa5318b6f8d6a3cfdef0d29de530eb005bfd3ca05835faa6ad63663f8dce7b2e') + + depends_on('zlib') + + # The src tree includes a plethora of variant Makefiles and the + # builder is expected to choose one that's appropriate. This'll + # do for a first cut. I can't test anything else.... + @property + def makefile_name(self): + if self.spec.satisfies('platform=darwin'): + name = 'Makefile.os_x86_64' + elif (self.spec.satisfies('platform=linux') and + self.spec.satisfies('target=x86_64')): + name = 'Makefile.linux64_sse2' + else: + tty.die('''Unsupported platform/target, must be +Darwin (assumes 64-bit) +Linux x86_64 +''') + return name + + @property + def makefile_path(self): + return join_path(self.stage.source_path, 'make', self.makefile_name) + + def edit(self, spec, prefix): + makefile = FileFilter(self.makefile_path) + makefile.filter('XDIR = .*', 'XDIR = {0}'.format(prefix.bin)) + + def build(self, spec, prefix): + with working_dir('src'): + make('-f', self.makefile_path) + + def install(self, spec, prefix): + with working_dir('src'): + mkdir(prefix.bin) + make('-f', self.makefile_path, 'install') |