1 files changed, 38 insertions, 0 deletions
diff --git a/var/spack/repos/builtin/packages/figtree/package.py b/var/spack/repos/builtin/packages/figtree/package.py
new file mode 100644
index 0000000000..bb4cd8258a
--- /dev/null
+++ b/var/spack/repos/builtin/packages/figtree/package.py
@@ -0,0 +1,38 @@
+# Copyright 2013-2018 Lawrence Livermore National Security, LLC and other
+# Spack Project Developers. See the top-level COPYRIGHT file for details.
+#
+# SPDX-License-Identifier: (Apache-2.0 OR MIT)
+
+from spack import *
+import os
+
+
+class Figtree(Package):
+    """FigTree is designed as a graphical viewer of phylogenetic trees and
+       as a program for producing publication-ready figures. As with most of
+       my programs, it was written for my own needs so may not be as polished
+       and feature-complete as a commercial program. In particular it is
+       designed to display summarized and annotated trees produced by BEAST."""
+
+    homepage = "https://github.com/rambaut/figtree"
+    url      = "https://github.com/rambaut/figtree/releases/download/v1.4.3/FigTree_v1.4.3.tgz"
+
+    version('1.4.3', sha256='f497d4dd3a6d220f6b62495b6f47a12ade50d87dbd8d6089f168e94d202f937b')
+
+    depends_on('java', type='run')
+
+    def patch(self):
+        # we have to change up the executable to point to the right program
+        filter_file('lib/figtree.jar',
+                    join_path(self.spec.prefix.lib, 'figtree.jar'),
+                    'bin/figtree', string=True)
+
+        # also set proper executable flags
+        os.chmod('bin/figtree', 0o775)
+
+    def install(self, spec, prefix):
+        mkdirp(prefix.bin)
+        install_tree('bin', prefix.bin)
+
+        mkdirp(prefix.lib)
+        install_tree('lib', prefix.lib)