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-rwxr-xr-xvar/spack/repos/builtin/packages/gatk/gatk.sh4
1 files changed, 4 insertions, 0 deletions
diff --git a/var/spack/repos/builtin/packages/gatk/gatk.sh b/var/spack/repos/builtin/packages/gatk/gatk.sh
new file mode 100755
index 0000000000..2bd68247a6
--- /dev/null
+++ b/var/spack/repos/builtin/packages/gatk/gatk.sh
@@ -0,0 +1,4 @@
+#!/bin/sh
+# convenience wrapper for the gatk jar file
+java -jar GenomeAnalysisTK.jar "$@"
+