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Diffstat (limited to 'var/spack/repos/builtin/packages/glfmultiples/package.py')
-rw-r--r-- | var/spack/repos/builtin/packages/glfmultiples/package.py | 30 |
1 files changed, 30 insertions, 0 deletions
diff --git a/var/spack/repos/builtin/packages/glfmultiples/package.py b/var/spack/repos/builtin/packages/glfmultiples/package.py new file mode 100644 index 0000000000..deb5789e24 --- /dev/null +++ b/var/spack/repos/builtin/packages/glfmultiples/package.py @@ -0,0 +1,30 @@ +# Copyright 2013-2018 Lawrence Livermore National Security, LLC and other +# Spack Project Developers. See the top-level COPYRIGHT file for details. +# +# SPDX-License-Identifier: (Apache-2.0 OR MIT) + +from spack import * + + +class Glfmultiples(MakefilePackage): + """glfMultiples is a GLF-based variant caller for next-generation + sequencing data. It takes a set of GLF format genotype likelihood + files as input and generates a VCF-format set of variant calls + as output. """ + + homepage = "https://genome.sph.umich.edu/wiki/GlfMultiples" + url = "http://www.sph.umich.edu/csg/abecasis/downloads/generic-glfMultiples-2010-06-16.tar.gz" + + version('2010-06-16', '64bf6bb7c76543f4c8fabce015a3cb11') + + depends_on('zlib') + + def edit(self, spec, prefix): + makefile = FileFilter('Makefile') + makefile.filter('CXX=.*', 'CXX = ' + env['CXX']) + makefile.filter('CFLAGS=.*', + 'CFLAGS=-O2 -I./libsrc -I./pdf ' + + '-D_FILE_OFFSET_BITS=64 -D__USE_LONG_INT') + + def install(self, spec, prefix): + make('INSTALLDIR=%s' % prefix, 'install') |