diff options
Diffstat (limited to 'var/spack/repos/builtin/packages/gmap-gsnap/package.py')
| -rw-r--r-- | var/spack/repos/builtin/packages/gmap-gsnap/package.py | 71 |
1 files changed, 44 insertions, 27 deletions
diff --git a/var/spack/repos/builtin/packages/gmap-gsnap/package.py b/var/spack/repos/builtin/packages/gmap-gsnap/package.py index 0223167767..2839dd761f 100644 --- a/var/spack/repos/builtin/packages/gmap-gsnap/package.py +++ b/var/spack/repos/builtin/packages/gmap-gsnap/package.py @@ -8,52 +8,69 @@ from spack.package import * class GmapGsnap(AutotoolsPackage): """GMAP: A Genomic Mapping and Alignment Program for - mRNA and EST Sequences, and GSNAP: Genomic Short-read - Nucleotide Alignment Program""" + mRNA and EST Sequences, and GSNAP: Genomic Short-read + Nucleotide Alignment Program""" homepage = "http://research-pub.gene.com/gmap/" - url = "http://research-pub.gene.com/gmap/src/gmap-gsnap-2017-06-16.tar.gz" + url = "http://research-pub.gene.com/gmap/src/gmap-gsnap-2017-06-16.tar.gz" - version('2021-03-08', sha256='00de0e945b86bcbda50df94c68a61957f3783e232cce466fcd5f8d3a55398aa2') - version('2020-06-01', sha256='7917f9f78570943f419445e371f2cc948c6741e73c3cbb063391756f4479d365') - version('2019-05-12', sha256='3dc1b6ee4f6c049c07bcf4a5aba30eb2d732997241cdcad818dab571719f8008') - version('2019-02-15', sha256='7e82b9867a1e561b4816fb2f2fb916294077c384c6a88bb94cce39bfe71ab3ac') - version('2018-07-04', sha256='a9f8c1f0810df65b2a089dc10be79611026f4c95e4681dba98fea3d55d598d24') - version('2018-03-25', sha256='a65bae6115fc50916ad7425d0b5873b611c002690bf35026bfcfc41ee0c0265a') - version('2018-02-12', sha256='5dedddab7f08f9924a995332ebc7bdbe2621fcd67021690707c876d865091fcc') - version('2017-06-16', sha256='2a277a6d45cade849be3bfb7b0f69f61ab79744af821a88eb1d599b32f358f8d') - version('2014-12-28', sha256='108433f3e3ea89b8117c8bb36d396913225caf1261d46ce6d89709ff1b44025d') + version( + "2021-03-08", sha256="00de0e945b86bcbda50df94c68a61957f3783e232cce466fcd5f8d3a55398aa2" + ) + version( + "2020-06-01", sha256="7917f9f78570943f419445e371f2cc948c6741e73c3cbb063391756f4479d365" + ) + version( + "2019-05-12", sha256="3dc1b6ee4f6c049c07bcf4a5aba30eb2d732997241cdcad818dab571719f8008" + ) + version( + "2019-02-15", sha256="7e82b9867a1e561b4816fb2f2fb916294077c384c6a88bb94cce39bfe71ab3ac" + ) + version( + "2018-07-04", sha256="a9f8c1f0810df65b2a089dc10be79611026f4c95e4681dba98fea3d55d598d24" + ) + version( + "2018-03-25", sha256="a65bae6115fc50916ad7425d0b5873b611c002690bf35026bfcfc41ee0c0265a" + ) + version( + "2018-02-12", sha256="5dedddab7f08f9924a995332ebc7bdbe2621fcd67021690707c876d865091fcc" + ) + version( + "2017-06-16", sha256="2a277a6d45cade849be3bfb7b0f69f61ab79744af821a88eb1d599b32f358f8d" + ) + version( + "2014-12-28", sha256="108433f3e3ea89b8117c8bb36d396913225caf1261d46ce6d89709ff1b44025d" + ) - depends_on('zlib') - depends_on('bzip2') + depends_on("zlib") + depends_on("bzip2") variant( - 'simd', - description='CPU support.', - values=('avx2', 'sse42', 'avx512', 'sse2'), + "simd", + description="CPU support.", + values=("avx2", "sse42", "avx512", "sse2"), multi=True, - default='sse2' + default="sse2", ) def configure(self, spec, prefix): - configure = Executable('../configure') + configure = Executable("../configure") - for simd in spec.variants['simd'].value: + for simd in spec.variants["simd"].value: with working_dir(simd, create=True): - configure('--with-simd-level={0}'.format(simd), - '--prefix={0}'.format(prefix)) + configure("--with-simd-level={0}".format(simd), "--prefix={0}".format(prefix)) def build(self, spec, prefix): - for simd in spec.variants['simd'].value: + for simd in spec.variants["simd"].value: with working_dir(simd): make() def check(self): - for simd in self.spec.variants['simd'].value: + for simd in self.spec.variants["simd"].value: with working_dir(simd): - make('check') + make("check") def install(self, spec, prefix): - for simd in spec.variants['simd'].value: + for simd in spec.variants["simd"].value: with working_dir(simd): - make('install') + make("install") |