diff options
Diffstat (limited to 'var/spack/repos/builtin/packages/gmap-gsnap/package.py')
| -rw-r--r-- | var/spack/repos/builtin/packages/gmap-gsnap/package.py | 65 |
1 files changed, 42 insertions, 23 deletions
diff --git a/var/spack/repos/builtin/packages/gmap-gsnap/package.py b/var/spack/repos/builtin/packages/gmap-gsnap/package.py index 7db09fb72d..bfa53525f2 100644 --- a/var/spack/repos/builtin/packages/gmap-gsnap/package.py +++ b/var/spack/repos/builtin/packages/gmap-gsnap/package.py @@ -1,27 +1,8 @@ -############################################################################## -# Copyright (c) 2013-2017, Lawrence Livermore National Security, LLC. -# Produced at the Lawrence Livermore National Laboratory. +# Copyright 2013-2018 Lawrence Livermore National Security, LLC and other +# Spack Project Developers. See the top-level COPYRIGHT file for details. # -# This file is part of Spack. -# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved. -# LLNL-CODE-647188 -# -# For details, see https://github.com/spack/spack -# Please also see the LICENSE file for our notice and the LGPL. -# -# This program is free software; you can redistribute it and/or modify -# it under the terms of the GNU Lesser General Public License (as -# published by the Free Software Foundation) version 2.1, February 1999. -# -# This program is distributed in the hope that it will be useful, but -# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF -# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and -# conditions of the GNU Lesser General Public License for more details. -# -# You should have received a copy of the GNU Lesser General Public -# License along with this program; if not, write to the Free Software -# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA -############################################################################## +# SPDX-License-Identifier: (Apache-2.0 OR MIT) + from spack import * @@ -33,4 +14,42 @@ class GmapGsnap(AutotoolsPackage): homepage = "http://research-pub.gene.com/gmap/" url = "http://research-pub.gene.com/gmap/src/gmap-gsnap-2017-06-16.tar.gz" + version('2018-07-04', sha256='a9f8c1f0810df65b2a089dc10be79611026f4c95e4681dba98fea3d55d598d24') + version('2018-03-25', 'f08e65c1e4d9574a3eb7f15f8ca6af16') + version('2018-02-12', '13152aedeef9ac66be915fc6bf6464f2') version('2017-06-16', 'fcc91b8bdd4bf12ae3124de0c00db0c0') + version('2014-12-28', '1ab07819c9e5b5b8970716165ccaa7da') + + depends_on('zlib') + depends_on('bzip2') + + variant( + 'simd', + description='CPU support.', + values=('avx2', 'sse42', 'avx512', 'sse2'), + multi=True, + default='sse2' + ) + + def configure(self, spec, prefix): + configure = Executable('../configure') + + for simd in spec.variants['simd'].value: + with working_dir(simd, create=True): + configure('--with-simd-level={0}'.format(simd), + '--prefix={0}'.format(prefix)) + + def build(self, spec, prefix): + for simd in spec.variants['simd'].value: + with working_dir(simd): + make() + + def check(self): + for simd in self.spec.variants['simd'].value: + with working_dir(simd): + make('check') + + def install(self, spec, prefix): + for simd in spec.variants['simd'].value: + with working_dir(simd): + make('install') |