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Diffstat (limited to 'var/spack/repos/builtin/packages/grabix/package.py')
-rw-r--r-- | var/spack/repos/builtin/packages/grabix/package.py | 30 |
1 files changed, 30 insertions, 0 deletions
diff --git a/var/spack/repos/builtin/packages/grabix/package.py b/var/spack/repos/builtin/packages/grabix/package.py new file mode 100644 index 0000000000..98059b3b69 --- /dev/null +++ b/var/spack/repos/builtin/packages/grabix/package.py @@ -0,0 +1,30 @@ +# Copyright 2013-2020 Lawrence Livermore National Security, LLC and other +# Spack Project Developers. See the top-level COPYRIGHT file for details. +# +# SPDX-License-Identifier: (Apache-2.0 OR MIT) + +from spack import * + + +class Grabix(MakefilePackage): + """Grabix leverages the fantastic BGZF library in samtools to provide + random access into text files that have been compressed with bgzip. + grabix creates it's own index (.gbi) of the bgzipped file. Once indexed, + one can extract arbitrary lines from the file with the grab command. + Or choose random lines with the, well, random command. + """ + + homepage = "https://github.com/arq5x/grabix" + url = "https://github.com/arq5x/grabix/archive/v0.1.7.tar.gz" + + maintainers = ['robqiao'] + + version('0.1.7', sha256='d90735c55c0985a4d751858d7ce9e36ad534fff4103257e8e981e34d5c915b28') + + conflicts('%gcc@7:', msg='grabix cannot be compiled with newer versions of GCC') + + def install(self, spec, prefix): + mkdirp(prefix.bin) + install('LICENSE', prefix) + install('simrep.chr1.bed', prefix) + install('grabix', prefix.bin) |