diff options
Diffstat (limited to 'var/spack/repos/builtin/packages/hapcut2/package.py')
| -rw-r--r-- | var/spack/repos/builtin/packages/hapcut2/package.py | 60 |
1 files changed, 31 insertions, 29 deletions
diff --git a/var/spack/repos/builtin/packages/hapcut2/package.py b/var/spack/repos/builtin/packages/hapcut2/package.py index 363455c78f..781516975d 100644 --- a/var/spack/repos/builtin/packages/hapcut2/package.py +++ b/var/spack/repos/builtin/packages/hapcut2/package.py @@ -8,38 +8,40 @@ from spack.package import * class Hapcut2(MakefilePackage): """HapCUT2 is a maximum-likelihood-based tool for assembling haplotypes - from DNA sequence reads, designed to 'just work' with excellent speed - and accuracy.""" + from DNA sequence reads, designed to 'just work' with excellent speed + and accuracy.""" homepage = "https://github.com/vibansal/HapCUT2" - git = "https://github.com/vibansal/HapCUT2.git" - maintainers = ['snehring'] - - version('v1.3.1', commit='c6481d5fd0618dc3e82b2eb8c2b4835d9a4f6da7') - version('2017-07-10', commit='2966b94c2c2f97813b757d4999b7a6471df1160e', - submodules=True, deprecated=True) - - depends_on('htslib@1.3:') - depends_on('curl') - depends_on('openssl') - depends_on('xz') - depends_on('bzip2') - depends_on('zlib') - - @when('@v1.3.1:') + git = "https://github.com/vibansal/HapCUT2.git" + maintainers = ["snehring"] + + version("v1.3.1", commit="c6481d5fd0618dc3e82b2eb8c2b4835d9a4f6da7") + version( + "2017-07-10", + commit="2966b94c2c2f97813b757d4999b7a6471df1160e", + submodules=True, + deprecated=True, + ) + + depends_on("htslib@1.3:") + depends_on("curl") + depends_on("openssl") + depends_on("xz") + depends_on("bzip2") + depends_on("zlib") + + @when("@v1.3.1:") def edit(self, spec, prefix): - filter_file('CC=.*$', '', 'Makefile') - filter_file('CFLAGS=.*$', 'CFLAGS=-Wall -g -O3 -D_GNU_SOURCE', 'Makefile') - with working_dir('hairs-src'): - filter_file(r'(keyvalue\* keypointer;)', 'extern \\1', - 'hashtable.h') - filter_file(r'(keypointer = ht->blist\[hash\];)', 'keyvalue* \\1', - 'hashtable.c') + filter_file("CC=.*$", "", "Makefile") + filter_file("CFLAGS=.*$", "CFLAGS=-Wall -g -O3 -D_GNU_SOURCE", "Makefile") + with working_dir("hairs-src"): + filter_file(r"(keyvalue\* keypointer;)", "extern \\1", "hashtable.h") + filter_file(r"(keypointer = ht->blist\[hash\];)", "keyvalue* \\1", "hashtable.c") def install(self, spec, prefix): mkdirp(prefix.bin) - with working_dir('build'): - if self.spec.satisfies('@2017-07-10'): - install('extractFOSMID', prefix.bin) - install('extractHAIRS', prefix.bin) - install('HAPCUT2', prefix.bin) + with working_dir("build"): + if self.spec.satisfies("@2017-07-10"): + install("extractFOSMID", prefix.bin) + install("extractHAIRS", prefix.bin) + install("HAPCUT2", prefix.bin) |