diff options
Diffstat (limited to 'var/spack/repos/builtin/packages/htslib/package.py')
| -rw-r--r-- | var/spack/repos/builtin/packages/htslib/package.py | 76 |
1 files changed, 40 insertions, 36 deletions
diff --git a/var/spack/repos/builtin/packages/htslib/package.py b/var/spack/repos/builtin/packages/htslib/package.py index 82e8e11a2d..006ff87be3 100644 --- a/var/spack/repos/builtin/packages/htslib/package.py +++ b/var/spack/repos/builtin/packages/htslib/package.py @@ -10,46 +10,50 @@ class Htslib(AutotoolsPackage): """C library for high-throughput sequencing data formats.""" homepage = "https://github.com/samtools/htslib" - url = "https://github.com/samtools/htslib/releases/download/1.13/htslib-1.13.tar.bz2" + url = "https://github.com/samtools/htslib/releases/download/1.13/htslib-1.13.tar.bz2" - version('1.14', sha256='ed221b8f52f4812f810eebe0cc56cd8355a5c9d21c62d142ac05ad0da147935f') - version('1.13', sha256='f2407df9f97f0bb6b07656579e41a1ca5100464067b6b21bf962a2ea4b0efd65') - version('1.12', sha256='2280141b46e953ba4ae01b98335a84f8e6ccbdb6d5cdbab7f70ee4f7e3b6f4ca') - version('1.11', sha256='cffadd9baa6fce27b8fe0b01a462b489f06a5433dfe92121f667f40f632538d7') - version('1.10.2', sha256='e3b543de2f71723830a1e0472cf5489ec27d0fbeb46b1103e14a11b7177d1939') - version('1.9', sha256='e04b877057e8b3b8425d957f057b42f0e8509173621d3eccaedd0da607d9929a') - version('1.8', sha256='c0ef1eec954a98cc708e9f99f6037db85db45670b52b6ab37abcc89b6c057ca1') - version('1.7', sha256='be3d4e25c256acdd41bebb8a7ad55e89bb18e2fc7fc336124b1e2c82ae8886c6') - version('1.6', sha256='9588be8be0c2390a87b7952d644e7a88bead2991b3468371347965f2e0504ccb') - version('1.5', sha256='a02b515ea51d86352b089c63d778fb5e8b9d784937cf157e587189cb97ad922d') - version('1.4', sha256='5cfc8818ff45cd6e924c32fec2489cb28853af8867a7ee8e755c4187f5883350') - version('1.3.1', sha256='49d53a2395b8cef7d1d11270a09de888df8ba06f70fe68282e8235ee04124ae6') - version('1.2', sha256='125c01421d5131afb4c3fd2bc9c7da6f4f1cd9ab5fc285c076080b9aca24bffc') + version("1.14", sha256="ed221b8f52f4812f810eebe0cc56cd8355a5c9d21c62d142ac05ad0da147935f") + version("1.13", sha256="f2407df9f97f0bb6b07656579e41a1ca5100464067b6b21bf962a2ea4b0efd65") + version("1.12", sha256="2280141b46e953ba4ae01b98335a84f8e6ccbdb6d5cdbab7f70ee4f7e3b6f4ca") + version("1.11", sha256="cffadd9baa6fce27b8fe0b01a462b489f06a5433dfe92121f667f40f632538d7") + version("1.10.2", sha256="e3b543de2f71723830a1e0472cf5489ec27d0fbeb46b1103e14a11b7177d1939") + version("1.9", sha256="e04b877057e8b3b8425d957f057b42f0e8509173621d3eccaedd0da607d9929a") + version("1.8", sha256="c0ef1eec954a98cc708e9f99f6037db85db45670b52b6ab37abcc89b6c057ca1") + version("1.7", sha256="be3d4e25c256acdd41bebb8a7ad55e89bb18e2fc7fc336124b1e2c82ae8886c6") + version("1.6", sha256="9588be8be0c2390a87b7952d644e7a88bead2991b3468371347965f2e0504ccb") + version("1.5", sha256="a02b515ea51d86352b089c63d778fb5e8b9d784937cf157e587189cb97ad922d") + version("1.4", sha256="5cfc8818ff45cd6e924c32fec2489cb28853af8867a7ee8e755c4187f5883350") + version("1.3.1", sha256="49d53a2395b8cef7d1d11270a09de888df8ba06f70fe68282e8235ee04124ae6") + version("1.2", sha256="125c01421d5131afb4c3fd2bc9c7da6f4f1cd9ab5fc285c076080b9aca24bffc") - variant('libcurl', - default=True, - description='Enable libcurl-based support for http/https/etc URLs,' - ' for versions >= 1.3. This also enables S3 and GCS support.') - variant('libdeflate', - default=True, - description='use libdeflate for faster crc and deflate algorithms') + variant( + "libcurl", + default=True, + description="Enable libcurl-based support for http/https/etc URLs," + " for versions >= 1.3. This also enables S3 and GCS support.", + ) + variant( + "libdeflate", + default=True, + description="use libdeflate for faster crc and deflate algorithms", + ) - depends_on('zlib') - depends_on('bzip2', when='@1.4:') - depends_on('xz', when='@1.4:') - depends_on('curl', when='@1.3:+libcurl') - depends_on('libdeflate', when='@1.8:+libdeflate') + depends_on("zlib") + depends_on("bzip2", when="@1.4:") + depends_on("xz", when="@1.4:") + depends_on("curl", when="@1.3:+libcurl") + depends_on("libdeflate", when="@1.8:+libdeflate") - depends_on('m4', when="@1.2") - depends_on('autoconf', when="@1.2") - depends_on('automake', when="@1.2") - depends_on('libtool', when="@1.2") + depends_on("m4", when="@1.2") + depends_on("autoconf", when="@1.2") + depends_on("automake", when="@1.2") + depends_on("libtool", when="@1.2") # v1.2 uses the automagically assembled tarball from .../archive/... # everything else uses the tarballs uploaded to the release def url_for_version(self, version): - if version.string == '1.2': - return 'https://github.com/samtools/htslib/archive/1.2.tar.gz' + if version.string == "1.2": + return "https://github.com/samtools/htslib/archive/1.2.tar.gz" else: url = "https://github.com/samtools/htslib/releases/download/{0}/htslib-{0}.tar.bz2" return url.format(version.dotted) @@ -58,10 +62,10 @@ class Htslib(AutotoolsPackage): spec = self.spec args = [] - if spec.satisfies('@1.3:'): - args.extend(self.enable_or_disable('libcurl')) + if spec.satisfies("@1.3:"): + args.extend(self.enable_or_disable("libcurl")) - if spec.satisfies('@1.8:'): - args.extend(self.enable_or_disable('libdeflate')) + if spec.satisfies("@1.8:"): + args.extend(self.enable_or_disable("libdeflate")) return args |