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Diffstat (limited to 'var/spack/repos/builtin/packages/igv/package.py')
| -rw-r--r-- | var/spack/repos/builtin/packages/igv/package.py | 54 |
1 files changed, 0 insertions, 54 deletions
diff --git a/var/spack/repos/builtin/packages/igv/package.py b/var/spack/repos/builtin/packages/igv/package.py deleted file mode 100644 index b905520629..0000000000 --- a/var/spack/repos/builtin/packages/igv/package.py +++ /dev/null @@ -1,54 +0,0 @@ -############################################################################## -# Copyright (c) 2013-2018, Lawrence Livermore National Security, LLC. -# Produced at the Lawrence Livermore National Laboratory. -# -# This file is part of Spack. -# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved. -# LLNL-CODE-647188 -# -# For details, see https://github.com/spack/spack -# Please also see the NOTICE and LICENSE files for our notice and the LGPL. -# -# This program is free software; you can redistribute it and/or modify -# it under the terms of the GNU Lesser General Public License (as -# published by the Free Software Foundation) version 2.1, February 1999. -# -# This program is distributed in the hope that it will be useful, but -# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF -# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and -# conditions of the GNU Lesser General Public License for more details. -# -# You should have received a copy of the GNU Lesser General Public -# License along with this program; if not, write to the Free Software -# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA -############################################################################## -from spack import * -import glob - - -class Igv(Package): - """The Integrative Genomics Viewer (IGV) is a high-performance - visualization tool for interactive exploration of large, - integrated genomic datasets.""" - - homepage = "http://software.broadinstitute.org/software/igv/" - - version('2.4.5', '4c45e1b281d8e3d8630aa485c5df6949', - url='http://data.broadinstitute.org/igv/projects/downloads/2.4/IGVSource_2.4.5.zip') - version('2.3.50', '7fdb903a59d556fad25e668b38e860f8', - url='http://data.broadinstitute.org/igv/projects/downloads/2.3/IGVSource_2.3.50.zip') - - depends_on('jdk@8:', type=('build', 'run'), when='@2.4:') - depends_on('jdk@7u0:7u999', type=('build', 'run'), when='@2.3:2.3.999') - depends_on('ant', type='build') - - def install(self, spec, prefix): - ant = self.spec['ant'].command - ant('all') - mkdirp(prefix.bin) - install('igv.sh', prefix.bin) - install('igv.jar', prefix.bin) - mkdirp(prefix.lib) - files = [x for x in glob.glob("lib/*jar")] - for f in files: - install(f, prefix.lib) |