diff options
Diffstat (limited to 'var/spack/repos/builtin/packages/interproscan/package.py')
-rw-r--r-- | var/spack/repos/builtin/packages/interproscan/package.py | 51 |
1 files changed, 50 insertions, 1 deletions
diff --git a/var/spack/repos/builtin/packages/interproscan/package.py b/var/spack/repos/builtin/packages/interproscan/package.py index 4bd5956f14..82380135a7 100644 --- a/var/spack/repos/builtin/packages/interproscan/package.py +++ b/var/spack/repos/builtin/packages/interproscan/package.py @@ -10,12 +10,16 @@ class Interproscan(Package): """InterProScan is the software package that allows sequences (protein and nucleic) to be scanned against InterPro's signatures. Signatures are predictive models, provided by several different - databases, that make up the InterPro consortium.""" + databases, that make up the InterPro consortium. By default this + does not download all the databases you likely want, you'll either + want to build with +databases or download the data archive for the + version you installed to a separate location and modify interproscan.properties""" homepage = "https://www.ebi.ac.uk/interpro/interproscan.html" url = "https://github.com/ebi-pf-team/interproscan/archive/5.36-75.0.tar.gz" maintainers("snehring") + version("5.63-95.0", sha256="3d7babd09e64da3d7104c58f1e5104a298d69425e3210952331bc3f1ddf89ca6") version("5.61-93.0", sha256="70aca3b14983733fe5119b6978cb707156d006d7f737aa60ce6c9addd6c288e4") version("5.56-89.0", sha256="75e6a8f86ca17356a2f77f75b07d6d8fb7b397c9575f6e9716b64983e490b230") version("5.38-76.0", sha256="cb191ff8eee275689b789167a57b368ea5c06bbcd36b4de23e8bbbbdc0fc7434") @@ -27,12 +31,53 @@ class Interproscan(Package): ) resource( + when="@5.63-95.0 +databases", + name="databases", + url="https://ftp.ebi.ac.uk/pub/databases/interpro/iprscan/5/5.63-95.0/alt/interproscan-data-5.63-95.0.tar.gz", + sha256="6048eabe2eeaa4630b7a6a0b34d8c5a1724b0d22bba318c04c43777368e16cc4", + ) + + resource( + when="@5.61-93.0 +databases", + name="databases", + url="https://ftp.ebi.ac.uk/pub/databases/interpro/iprscan/5/5.61-93.0/alt/interproscan-data-5.61-93.0.tar.gz", + sha256="064aa4b4c3b2e27b457298359087878e48fc785bff801c95691f090d1b83867d", + ) + + resource( + when="5.56-89.0 +databases", + name="databases", + url="https://ftp.ebi.ac.uk/pub/databases/interpro/iprscan/5/5.56-89.0/alt/interproscan-data-5.56-89.0.tar.gz", + sha256="49cd0c69711f9469f3b68857f4581b23ff12765ca2b12893d18e5a9a5cd8032d", + ) + + resource( + when="5.38-76.0 +databases", + name="databases", + url="https://ftp.ebi.ac.uk/pub/databases/interpro/iprscan/5/5.38-76.0/alt/interproscan-data-5.38-76.0.tar.gz", + sha256="e05e15d701037504f92ecf849c20317e70df28e78ff1945826b3c1e16d9b9cce", + ) + + resource( + when="5.36-75.0 +databases", + name="databases", + url="https://ftp.ebi.ac.uk/pub/databases/interpro/iprscan/5/5.36-75.0/alt/interproscan-data-5.36-75.0.tar.gz", + sha256="e9b1e6f2d1c20d06661a31a08c973bc8ddf039a4cf1e45ec4443200375e5d6a4", + ) + + resource( when="@:4.8", name="binaries", url="https://ftp.ebi.ac.uk/pub/databases/interpro/iprscan/BIN/4.x/iprscan_bin4.x_Linux64.tar.gz", sha256="551610a4682b112522f3ded5268f76ba9a47399a72e726fafb17cc938a50e7ee", ) + variant( + "databases", + default=False, + description="Fetch and include databases in the install. Greatly increases install size.", + ) + depends_on("java@8.0:8.9", type=("build", "run"), when="@5:5.36-99.0") depends_on("java@11", type=("build", "run"), when="@5.37-76.0:") depends_on("maven", type="build", when="@5:") @@ -63,6 +108,10 @@ class Interproscan(Package): target = join_path("core", "jms-implementation", "target", "interproscan-5-dist") install_tree(target, prefix) + if spec.satisfies("+databases"): + remove_directory_contents(prefix.data) + install_tree(f"interproscan-{self.spec.version}/data", prefix.data) + # link the main shell script into the PATH symlink(join_path(prefix, "interproscan.sh"), join_path(prefix.bin, "interproscan.sh")) |