diff options
Diffstat (limited to 'var/spack/repos/builtin/packages/kaks-calculator/package.py')
| -rw-r--r-- | var/spack/repos/builtin/packages/kaks-calculator/package.py | 27 |
1 files changed, 13 insertions, 14 deletions
diff --git a/var/spack/repos/builtin/packages/kaks-calculator/package.py b/var/spack/repos/builtin/packages/kaks-calculator/package.py index 51d2f675d1..cd5c997575 100644 --- a/var/spack/repos/builtin/packages/kaks-calculator/package.py +++ b/var/spack/repos/builtin/packages/kaks-calculator/package.py @@ -8,33 +8,32 @@ from spack.package import * class KaksCalculator(MakefilePackage, SourceforgePackage): """KaKs_Calculator adopts model selection and model averaging to calculate - nonsynonymous (Ka) and synonymous (Ks) substitution rates, attempting to - include as many features as needed for accurately capturing evolutionary - information in protein-coding sequences.""" + nonsynonymous (Ka) and synonymous (Ks) substitution rates, attempting to + include as many features as needed for accurately capturing evolutionary + information in protein-coding sequences.""" homepage = "https://sourceforge.net/projects/kakscalculator2" sourceforge_mirror_path = "kakscalculator2/KaKs_Calculator2.0.tar.gz" - version('2.0', sha256='e2df719a2fecc549d8ddc4e6d8f5cfa4b248282dca319c1928eaf886d68ec3c5') + version("2.0", sha256="e2df719a2fecc549d8ddc4e6d8f5cfa4b248282dca319c1928eaf886d68ec3c5") - build_directory = 'src' + build_directory = "src" def url_for_version(self, version): - url = 'https://downloads.sourceforge.net/project/kakscalculator2/KaKs_Calculator{0}.tar.gz' + url = "https://downloads.sourceforge.net/project/kakscalculator2/KaKs_Calculator{0}.tar.gz" return url.format(version) # include<string.h> needs added to header file for compilation to work def patch(self): with working_dir(self.build_directory): - header = FileFilter('base.h') - header.filter('#include<time.h>', - '#include<time.h>\n#include<string.h>') + header = FileFilter("base.h") + header.filter("#include<time.h>", "#include<time.h>\n#include<string.h>") def install(self, spec, prefix): mkdirp(prefix.bin) with working_dir(self.build_directory): - install('KaKs_Calculator', prefix.bin) - install('ConPairs', prefix.bin) - install('AXTConvertor', prefix.bin) - install_tree('doc', prefix.doc) - install_tree('examples', prefix.examples) + install("KaKs_Calculator", prefix.bin) + install("ConPairs", prefix.bin) + install("AXTConvertor", prefix.bin) + install_tree("doc", prefix.doc) + install_tree("examples", prefix.examples) |