diff options
Diffstat (limited to 'var/spack/repos/builtin/packages/libbeagle/package.py')
| -rw-r--r-- | var/spack/repos/builtin/packages/libbeagle/package.py | 80 |
1 files changed, 41 insertions, 39 deletions
diff --git a/var/spack/repos/builtin/packages/libbeagle/package.py b/var/spack/repos/builtin/packages/libbeagle/package.py index 5d68b2eb0d..a466c893cb 100644 --- a/var/spack/repos/builtin/packages/libbeagle/package.py +++ b/var/spack/repos/builtin/packages/libbeagle/package.py @@ -8,72 +8,74 @@ from spack.package import * class Libbeagle(AutotoolsPackage, CudaPackage): """Beagle performs genotype calling, genotype phasing, imputation of - ungenotyped markers, and identity-by-descent segment detection.""" + ungenotyped markers, and identity-by-descent segment detection.""" homepage = "https://github.com/beagle-dev/beagle-lib" - url = "https://github.com/beagle-dev/beagle-lib/archive/v3.1.2.tar.gz" + url = "https://github.com/beagle-dev/beagle-lib/archive/v3.1.2.tar.gz" - version('3.1.2', sha256='dd872b484a3a9f0bce369465e60ccf4e4c0cd7bd5ce41499415366019f236275') - version('2.1.2', sha256='82ff13f4e7d7bffab6352e4551dfa13afabf82bff54ea5761d1fc1e78341d7de', - url='https://github.com/beagle-dev/beagle-lib/archive/beagle_release_2_1_2.tar.gz') + version("3.1.2", sha256="dd872b484a3a9f0bce369465e60ccf4e4c0cd7bd5ce41499415366019f236275") + version( + "2.1.2", + sha256="82ff13f4e7d7bffab6352e4551dfa13afabf82bff54ea5761d1fc1e78341d7de", + url="https://github.com/beagle-dev/beagle-lib/archive/beagle_release_2_1_2.tar.gz", + ) - depends_on('autoconf', type='build') - depends_on('automake', type='build') - depends_on('libtool', type='build') - depends_on('m4', type='build') + depends_on("autoconf", type="build") + depends_on("automake", type="build") + depends_on("libtool", type="build") + depends_on("m4", type="build") - depends_on('subversion', type='build') - depends_on('pkgconfig', type='build') - depends_on('java', type='build') - depends_on('opencl', when='+opencl') + depends_on("subversion", type="build") + depends_on("pkgconfig", type="build") + depends_on("java", type="build") + depends_on("opencl", when="+opencl") cuda_arch_values = CudaPackage.cuda_arch_values - variant('opencl', default=False, description='Include OpenCL (GPU) support') + variant("opencl", default=False, description="Include OpenCL (GPU) support") variant( - 'cuda_arch', - description='CUDA architecture', - default='none', - values=('none',) + cuda_arch_values, - multi=False + "cuda_arch", + description="CUDA architecture", + default="none", + values=("none",) + cuda_arch_values, + multi=False, ) - conflicts('cuda_arch=none', when='+cuda', - msg='must select a CUDA architecture') + conflicts("cuda_arch=none", when="+cuda", msg="must select a CUDA architecture") def patch(self): # update cuda architecture if necessary - if '+cuda' in self.spec: - cuda_arch = self.spec.variants['cuda_arch'].value - archflag = '-arch=compute_{0}'.format(cuda_arch) + if "+cuda" in self.spec: + cuda_arch = self.spec.variants["cuda_arch"].value + archflag = "-arch=compute_{0}".format(cuda_arch) - filter_file('-arch compute_13', '', - 'libhmsbeagle/GPU/kernels/Makefile.am', - string=True) + filter_file( + "-arch compute_13", "", "libhmsbeagle/GPU/kernels/Makefile.am", string=True + ) - filter_file(r'(NVCCFLAGS="-O3).*(")', - r'\1 {0}\2'.format(archflag), 'configure.ac') + filter_file(r'(NVCCFLAGS="-O3).*(")', r"\1 {0}\2".format(archflag), "configure.ac") # point CUDA_LIBS to libcuda.so - filter_file('-L$with_cuda/lib', '-L$with_cuda/lib64/stubs', - 'configure.ac', string=True) + filter_file( + "-L$with_cuda/lib", "-L$with_cuda/lib64/stubs", "configure.ac", string=True + ) def autoreconf(self, spec, prefix): - which('bash')('autogen.sh') + which("bash")("autogen.sh") def configure_args(self): args = [ # Since spack will inject architecture flags turn off -march=native # when building libbeagle. - '--disable-march-native', + "--disable-march-native", ] - if '+cuda' in self.spec: - args.append('--with-cuda={0}'.format(self.spec['cuda'].prefix)) + if "+cuda" in self.spec: + args.append("--with-cuda={0}".format(self.spec["cuda"].prefix)) else: - args.append('--without-cuda') + args.append("--without-cuda") - if '+opencl' in self.spec: - args.append('--with-opencl={0}'.format(self.spec['opencl'].prefix)) + if "+opencl" in self.spec: + args.append("--with-opencl={0}".format(self.spec["opencl"].prefix)) else: - args.append('--without-opencl') + args.append("--without-opencl") return args |