1 files changed, 27 insertions, 0 deletions
diff --git a/var/spack/repos/builtin/packages/mefit/package.py b/var/spack/repos/builtin/packages/mefit/package.py
new file mode 100644
index 0000000000..ce21fc9261
--- /dev/null
+++ b/var/spack/repos/builtin/packages/mefit/package.py
@@ -0,0 +1,27 @@
+# Copyright 2013-2018 Lawrence Livermore National Security, LLC and other
+# Spack Project Developers. See the top-level COPYRIGHT file for details.
+#
+# SPDX-License-Identifier: (Apache-2.0 OR MIT)
+
+from spack import *
+
+
+class Mefit(Package):
+    """This pipeline will merge overlapping paired-end reads, calculate
+    merge statistics, and filter reads for quality."""
+
+    homepage = "https://github.com/nisheth/MeFiT"
+    git      = "https://github.com/nisheth/MeFiT.git"
+
+    version('1.0', commit='0733326d8917570bbf70ff5c0f710bf66c13db09')
+
+    depends_on('py-numpy')
+    depends_on('py-htseq')
+    depends_on('jellyfish')
+    depends_on('casper %gcc@4.8.5')
+
+    def install(self, spec, prefix):
+        install_tree('.', prefix)
+
+    def setup_environment(self, spack_env, run_env):
+        run_env.prepend_path('PATH', self.prefix)