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Diffstat (limited to 'var/spack/repos/builtin/packages/meraculous/package.py')
| -rw-r--r-- | var/spack/repos/builtin/packages/meraculous/package.py | 33 |
1 files changed, 33 insertions, 0 deletions
diff --git a/var/spack/repos/builtin/packages/meraculous/package.py b/var/spack/repos/builtin/packages/meraculous/package.py new file mode 100644 index 0000000000..cb9c96eff7 --- /dev/null +++ b/var/spack/repos/builtin/packages/meraculous/package.py @@ -0,0 +1,33 @@ +# Copyright 2013-2018 Lawrence Livermore National Security, LLC and other +# Spack Project Developers. See the top-level COPYRIGHT file for details. +# +# SPDX-License-Identifier: (Apache-2.0 OR MIT) + +from spack import * + + +class Meraculous(CMakePackage): + """Meraculous is a while genome assembler for Next Generation Sequencing + data geared for large genomes.""" + + homepage = "http://jgi.doe.gov/data-and-tools/meraculous/" + url = "https://downloads.sourceforge.net/project/meraculous20/Meraculous-v2.2.4.tar.gz" + git = "https://bitbucket.org/berkeleylab/genomics-meraculous2.git" + + version('2.2.5.1', branch='release-2.2.5.1') + version('2.2.4', '349feb6cb178643a46e4b092c87bad3a') + + depends_on('perl', type=('build', 'run')) + depends_on('boost@1.5.0:') + depends_on('gnuplot@3.7:') + depends_on('perl-log-log4perl', type=('build', 'run')) + + conflicts('%gcc@6.0.0:', when='@2.2.4') + + def patch(self): + edit = FileFilter('CMakeLists.txt') + edit.filter("-static-libstdc\+\+", "") + + def setup_environment(self, spack_env, run_env): + run_env.set('MERACULOUS_ROOT', self.prefix) + run_env.prepend_path('PERL5LIB', self.prefix.lib) |