diff options
Diffstat (limited to 'var/spack/repos/builtin/packages/migrate/package.py')
| -rw-r--r-- | var/spack/repos/builtin/packages/migrate/package.py | 64 |
1 files changed, 33 insertions, 31 deletions
diff --git a/var/spack/repos/builtin/packages/migrate/package.py b/var/spack/repos/builtin/packages/migrate/package.py index 3f30d5511e..82ae392300 100644 --- a/var/spack/repos/builtin/packages/migrate/package.py +++ b/var/spack/repos/builtin/packages/migrate/package.py @@ -8,32 +8,31 @@ from spack.package import * class Migrate(AutotoolsPackage): """Migrate estimates effective population sizes and past migration rates - between n population assuming a migration matrix model with asymmetric - migration rates and different subpopulation sizes""" + between n population assuming a migration matrix model with asymmetric + migration rates and different subpopulation sizes""" homepage = "https://popgen.sc.fsu.edu/" - url = "https://popgen.sc.fsu.edu/currentversions/migrate-3.6.11.src.tar.gz" + url = "https://popgen.sc.fsu.edu/currentversions/migrate-3.6.11.src.tar.gz" - version('3.6.11', sha256='a9ba06a4e995a45b8d04037f5f2da23e1fe64a2f3565189bdd50c62c6fe01fb8') + version("3.6.11", sha256="a9ba06a4e995a45b8d04037f5f2da23e1fe64a2f3565189bdd50c62c6fe01fb8") - variant('mpi', default=False, - description='Build MPI binaries') + variant("mpi", default=False, description="Build MPI binaries") - depends_on('autoconf', type='build') - depends_on('automake', type='build') - depends_on('libtool', type='build') - depends_on('m4', type='build') - depends_on('zlib', type='link') + depends_on("autoconf", type="build") + depends_on("automake", type="build") + depends_on("libtool", type="build") + depends_on("m4", type="build") + depends_on("zlib", type="link") - depends_on('openmpi', type=('build', 'link', 'run'), when='+mpi') + depends_on("openmpi", type=("build", "link", "run"), when="+mpi") - configure_directory = 'src' + configure_directory = "src" def configure_args(self): - return ['--with-zlib=system'] + return ["--with-zlib=system"] def build(self, spec, prefix): - with working_dir('src'): + with working_dir("src"): # this software is written with parts both in C and C++. # it tries to link using gcc which causes problems, so this package # explicitly links with g++ (CXX) instead. @@ -42,34 +41,37 @@ class Migrate(AutotoolsPackage): # so the package uses a custom filter by replacing substrings # in the Makefile. - mfc = '' - with open('Makefile') as m: + mfc = "" + with open("Makefile") as m: mfc = mfc_old = m.read() # replace linking step - mfc = mfc.replace('$(NAME): $(PRODUCT_DEPENDS)\n\t$(CC)', - '$(NAME): $(PRODUCT_DEPENDS)\n\t$(CXX)') - mfc = mfc.replace('$(MPINAME): $(PRODUCT_DEPENDS)\n\t$(CC)', - '$(MPINAME): $(PRODUCT_DEPENDS)\n\t$(CXX)') + mfc = mfc.replace( + "$(NAME): $(PRODUCT_DEPENDS)\n\t$(CC)", "$(NAME): $(PRODUCT_DEPENDS)\n\t$(CXX)" + ) + mfc = mfc.replace( + "$(MPINAME): $(PRODUCT_DEPENDS)\n\t$(CC)", + "$(MPINAME): $(PRODUCT_DEPENDS)\n\t$(CXX)", + ) # make sure the replace worked - if (mfc == mfc_old): - raise InstallError('Failed to update linker command') + if mfc == mfc_old: + raise InstallError("Failed to update linker command") # don't try to install MPI binaries that aren't there - if '+mpi' not in spec: - line = '$(INSTALL) $(IFLAGS) $(MPINAME) $(INSTALLDIR)' - mfc = mfc.replace(line, '') + if "+mpi" not in spec: + line = "$(INSTALL) $(IFLAGS) $(MPINAME) $(INSTALLDIR)" + mfc = mfc.replace(line, "") # write modified makefile back - with open('Makefile', 'w') as m: + with open("Makefile", "w") as m: m.write(mfc) make() - if '+mpi' in spec: - make('mpis') + if "+mpi" in spec: + make("mpis") def install(self, spec, prefix): mkdirp(prefix.man) - with working_dir('src'): - make('install') + with working_dir("src"): + make("install") |