diff options
Diffstat (limited to 'var/spack/repos/builtin/packages/mira/package.py')
| -rw-r--r-- | var/spack/repos/builtin/packages/mira/package.py | 30 |
1 files changed, 17 insertions, 13 deletions
diff --git a/var/spack/repos/builtin/packages/mira/package.py b/var/spack/repos/builtin/packages/mira/package.py index 486fe7ad97..5b1afc872d 100644 --- a/var/spack/repos/builtin/packages/mira/package.py +++ b/var/spack/repos/builtin/packages/mira/package.py @@ -9,31 +9,35 @@ from spack.pkg.builtin.boost import Boost class Mira(AutotoolsPackage): """MIRA is a multi-pass DNA sequence data assembler/mapper for whole genome - and EST/RNASeq projects.""" + and EST/RNASeq projects.""" homepage = "https://sourceforge.net/projects/mira-assembler/" - url = "https://downloads.sourceforge.net/project/mira-assembler/MIRA/stable/mira-4.0.2.tar.bz2" + url = "https://downloads.sourceforge.net/project/mira-assembler/MIRA/stable/mira-4.0.2.tar.bz2" - version('4.0.2', sha256='a32cb2b21e0968a5536446287c895fe9e03d11d78957554e355c1080b7b92a80') + version("4.0.2", sha256="a32cb2b21e0968a5536446287c895fe9e03d11d78957554e355c1080b7b92a80") - depends_on('boost@1.46:') + depends_on("boost@1.46:") # TODO: replace this with an explicit list of components of Boost, # for instance depends_on('boost +filesystem') # See https://github.com/spack/spack/pull/22303 for reference depends_on(Boost.with_default_variants) - depends_on('expat@2.0.1:') - depends_on('gperftools') + depends_on("expat@2.0.1:") + depends_on("gperftools") - conflicts('%gcc@6:', when='@:4.0.2') + conflicts("%gcc@6:", when="@:4.0.2") def patch(self): - with working_dir(join_path('src', 'progs')): - edit = FileFilter('quirks.C') - edit.filter('#include <boost/filesystem.hpp>', - '#include <boost/filesystem.hpp>\n#include <iostream>') + with working_dir(join_path("src", "progs")): + edit = FileFilter("quirks.C") + edit.filter( + "#include <boost/filesystem.hpp>", + "#include <boost/filesystem.hpp>\n#include <iostream>", + ) def configure_args(self): - args = ['--with-boost=%s' % self.spec['boost'].prefix, - '--with-expat=%s' % self.spec['expat'].prefix] + args = [ + "--with-boost=%s" % self.spec["boost"].prefix, + "--with-expat=%s" % self.spec["expat"].prefix, + ] return args |