1 files changed, 33 insertions, 0 deletions
diff --git a/var/spack/repos/builtin/packages/mira/package.py b/var/spack/repos/builtin/packages/mira/package.py
new file mode 100644
index 0000000000..f842ed8860
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+++ b/var/spack/repos/builtin/packages/mira/package.py
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+# Copyright 2013-2018 Lawrence Livermore National Security, LLC and other
+# Spack Project Developers. See the top-level COPYRIGHT file for details.
+#
+# SPDX-License-Identifier: (Apache-2.0 OR MIT)
+
+from spack import *
+
+
+class Mira(AutotoolsPackage):
+    """MIRA is a multi-pass DNA sequence data assembler/mapper for whole genome
+       and EST/RNASeq projects."""
+
+    homepage = "http://sourceforge.net/projects/mira-assembler/"
+    url      = "https://downloads.sourceforge.net/project/mira-assembler/MIRA/stable/mira-4.0.2.tar.bz2"
+
+    version('4.0.2', '1921b426910653a34a6dbb37346f28ea')
+
+    depends_on('boost@1.46:')
+    depends_on('expat@2.0.1:')
+    depends_on('gperftools')
+
+    conflicts('%gcc@6:', when='@:4.0.2')
+
+    def patch(self):
+        with working_dir(join_path('src', 'progs')):
+            edit = FileFilter('quirks.C')
+            edit.filter('#include <boost/filesystem.hpp>',
+                        '#include <boost/filesystem.hpp>\n#include <iostream>')
+
+    def configure_args(self):
+        args = ['--with-boost=%s' % self.spec['boost'].prefix,
+                '--with-expat=%s' % self.spec['expat'].prefix]
+        return args