diff options
Diffstat (limited to 'var/spack/repos/builtin/packages/mumps/package.py')
| -rw-r--r-- | var/spack/repos/builtin/packages/mumps/package.py | 168 |
1 files changed, 73 insertions, 95 deletions
diff --git a/var/spack/repos/builtin/packages/mumps/package.py b/var/spack/repos/builtin/packages/mumps/package.py index 8a90ef72d0..92c45c9b95 100644 --- a/var/spack/repos/builtin/packages/mumps/package.py +++ b/var/spack/repos/builtin/packages/mumps/package.py @@ -23,10 +23,7 @@ # Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA ############################################################################## from spack import * -import os -import sys -import subprocess - +import os, sys, glob class Mumps(Package): """MUMPS: a MUltifrontal Massively Parallel sparse direct Solver""" @@ -47,6 +44,7 @@ class Mumps(Package): variant('idx64', default=False, description='Use int64_t/integer*8 as default index type') variant('shared', default=True, description='Build shared libraries') + depends_on('scotch + esmumps', when='~ptscotch+scotch') depends_on('scotch + esmumps + mpi', when='+ptscotch') depends_on('metis@5:', when='+metis') @@ -56,64 +54,49 @@ class Mumps(Package): depends_on('scalapack', when='+mpi') depends_on('mpi', when='+mpi') - patch('mumps-shared.patch', when='+shared') - # this function is not a patch function because in case scalapack # is needed it uses self.spec['scalapack'].fc_link set by the # setup_dependent_environment in scalapck. This happen after patch # end before install # def patch(self): def write_makefile_inc(self): - if (('+parmetis' in self.spec or - '+ptscotch' in self.spec)) and '+mpi' not in self.spec: - raise RuntimeError('You cannot use the variants parmetis or ptscotch without mpi') # NOQA: E501 + if ('+parmetis' in self.spec or '+ptscotch' in self.spec) and '+mpi' not in self.spec: + raise RuntimeError('You cannot use the variants parmetis or ptscotch without mpi') - makefile_conf = [ - "LIBBLAS = -L%s -lblas" % self.spec['blas'].prefix.lib - ] + makefile_conf = ["LIBBLAS = -L%s -lblas" % self.spec['blas'].prefix.lib] orderings = ['-Dpord'] if '+ptscotch' in self.spec or '+scotch' in self.spec: join_lib = ' -l%s' % ('pt' if '+ptscotch' in self.spec else '') - makefile_conf.extend([ - "ISCOTCH = -I%s" % self.spec['scotch'].prefix.include, - "LSCOTCH = -L%s %s%s" % (self.spec['scotch'].prefix.lib, - join_lib, - join_lib.join(['esmumps', - 'scotch', - 'scotcherr'])) - ]) + makefile_conf.extend( + ["ISCOTCH = -I%s" % self.spec['scotch'].prefix.include, + "LSCOTCH = -L%s %s%s" % (self.spec['scotch'].prefix.lib, + join_lib, + join_lib.join(['esmumps', 'scotch', 'scotcherr']))]) orderings.append('-Dscotch') if '+ptscotch' in self.spec: orderings.append('-Dptscotch') if '+parmetis' in self.spec and '+metis' in self.spec: - makefile_conf.extend([ - "IMETIS = -I%s" % self.spec['parmetis'].prefix.include, - "LMETIS = -L%s -l%s -L%s -l%s" % ( - self.spec['parmetis'].prefix.lib, 'parmetis', - self.spec['metis'].prefix.lib, 'metis') - ]) + libname = 'parmetis' if '+parmetis' in self.spec else 'metis' + makefile_conf.extend( + ["IMETIS = -I%s" % self.spec['parmetis'].prefix.include, + "LMETIS = -L%s -l%s -L%s -l%s" % (self.spec['parmetis'].prefix.lib, 'parmetis',self.spec['metis'].prefix.lib, 'metis')]) orderings.append('-Dparmetis') elif '+metis' in self.spec: - makefile_conf.extend([ - "IMETIS = -I%s" % self.spec['metis'].prefix.include, - "LMETIS = -L%s -l%s" % (self.spec['metis'].prefix.lib, - 'metis') - ]) + makefile_conf.extend( + ["IMETIS = -I%s" % self.spec['metis'].prefix.include, + "LMETIS = -L%s -l%s" % (self.spec['metis'].prefix.lib, 'metis')]) orderings.append('-Dmetis') makefile_conf.append("ORDERINGSF = %s" % (' '.join(orderings))) - # when building shared libs need -fPIC, otherwise /usr/bin/ld: - # graph.o: relocation R_X86_64_32 against `.rodata.str1.1' can - # not be used when making a shared object; recompile with - # -fPIC + # when building shared libs need -fPIC, otherwise + # /usr/bin/ld: graph.o: relocation R_X86_64_32 against `.rodata.str1.1' can not be used when making a shared object; recompile with -fPIC fpic = '-fPIC' if '+shared' in self.spec else '' - # TODO: test this part, it needs a full blas, scalapack and # partitionning environment with 64bit integers if '+idx64' in self.spec: @@ -121,7 +104,7 @@ class Mumps(Package): # the fortran compilation flags most probably are # working only for intel and gnu compilers this is # perhaps something the compiler should provide - ['OPTF = %s -O -DALLOW_NON_INIT %s' % (fpic, '-fdefault-integer-8' if self.compiler.name == "gcc" else '-i8'), # NOQA: E501 + ['OPTF = %s -O -DALLOW_NON_INIT %s' % (fpic,'-fdefault-integer-8' if self.compiler.name == "gcc" else '-i8'), 'OPTL = %s -O ' % fpic, 'OPTC = %s -O -DINTSIZE64' % fpic]) else: @@ -130,47 +113,49 @@ class Mumps(Package): 'OPTL = %s -O ' % fpic, 'OPTC = %s -O ' % fpic]) + if '+mpi' in self.spec: makefile_conf.extend( - ["CC = %s" % self.spec['mpi'].mpicc, - "FC = %s" % self.spec['mpi'].mpifc, + ["CC = %s" % join_path(self.spec['mpi'].prefix.bin, 'mpicc'), + "FC = %s" % join_path(self.spec['mpi'].prefix.bin, 'mpif90'), + "FL = %s" % join_path(self.spec['mpi'].prefix.bin, 'mpif90'), "SCALAP = %s" % self.spec['scalapack'].fc_link, "MUMPS_TYPE = par"]) else: makefile_conf.extend( ["CC = cc", "FC = fc", + "FL = fc", "MUMPS_TYPE = seq"]) # TODO: change the value to the correct one according to the # compiler possible values are -DAdd_, -DAdd__ and/or -DUPPER - makefile_conf.extend([ - 'CDEFS = -DAdd_', - 'FL = $(FC)', - ]) + makefile_conf.append("CDEFS = -DAdd_") if '+shared' in self.spec: - makefile_conf.append('SHLIBEXT = .%s' % dso_suffix) if sys.platform == 'darwin': - makefile_conf.append( - 'LDFLAGS = -dynamiclib -Wl,-install_name -Wl,{0}/$(notdir $@) {1}{0} -undefined dynamic_lookup'.format(prefix.lib, self.compiler.fc_rpath_arg) # NOQA: E501 - ) + # Building dylibs with mpif90 causes segfaults on 10.8 and 10.10. Use gfortran. (Homebrew) + makefile_conf.extend([ + 'LIBEXT=.dylib', + 'AR=%s -dynamiclib -Wl,-install_name -Wl,%s/$(notdir $@) -undefined dynamic_lookup -o ' % (os.environ['FC'],prefix.lib), + 'RANLIB=echo' + ]) else: - makefile_conf.append( - 'LDFLAGS = -shared {0}{1}'.format( - self.compiler.fc_rpath_arg, - prefix.lib) - ) - - makefile_conf.extend([ - 'LIBEXT = .a', - 'AR = ar vr ', - 'RANLIB = ranlib' - ]) - - makefile_inc_template = \ - join_path(os.path.dirname(self.module.__file__), - 'Makefile.inc') + makefile_conf.extend([ + 'LIBEXT=.so', + 'AR=$(FL) -shared -Wl,-soname -Wl,%s/$(notdir $@) -o' % prefix.lib, + 'RANLIB=echo' + ]) + else: + makefile_conf.extend([ + 'LIBEXT = .a', + 'AR = ar vr', + 'RANLIB = ranlib' + ]) + + + makefile_inc_template = join_path(os.path.dirname(self.module.__file__), + 'Makefile.inc') with open(makefile_inc_template, "r") as fh: makefile_conf.extend(fh.read().split('\n')) @@ -179,53 +164,46 @@ class Mumps(Package): makefile_inc = '\n'.join(makefile_conf) fh.write(makefile_inc) + + def install(self, spec, prefix): make_libs = [] # the choice to compile ?examples is to have kind of a sanity # check on the libraries generated. if '+float' in spec: - make_libs.append('s') + make_libs.append('sexamples') if '+complex' in spec: - make_libs.append('c') + make_libs.append('cexamples') if '+double' in spec: - make_libs.append('d') + make_libs.append('dexamples') if '+complex' in spec: - make_libs.append('z') + make_libs.append('zexamples') self.write_makefile_inc() - make('mumps_lib', parallel=False) - make(*make_libs) + # Build fails in parallel + make(*make_libs, parallel=False) install_tree('lib', prefix.lib) install_tree('include', prefix.include) - if '~mpi' in spec: - install('libseq/libmpiseq.a', prefix.lib) - if '+shared' in spec: - install('libseq/libmpiseq.{0}'.format(dso_suffix), prefix.lib) - install('libseq/mpi.h', prefix.include) - install('libseq/mpif.h', prefix.include) - - # FIXME: extend the tests to mpirun -np 2 (or alike) when - # build with MPI - # FIXME: use something like numdiff to compare blessed output - # with the current - # TODO: test the installed mumps and not the one in stage - if '~mpi' in spec: - for t in make_libs: - make('{0}examples'.format(t)) - - with working_dir('examples'): - for t in make_libs: - input_file = 'input_simpletest_{0}'.format( - 'real' if t in ['s', 'd'] else 'cmplx') - with open(input_file) as input: - test = './{0}simpletest'.format(t) - ret = subprocess.call(test, - stdin=input) - if ret is not 0: - raise RuntimeError( - 'The test {0} did not pass'.format(test)) + if '~mpi' in spec: + lib_dsuffix = '.dylib' if sys.platform == 'darwin' else '.so' + lib_suffix = lib_dsuffix if '+shared' in spec else '.a' + install('libseq/libmpiseq%s' % lib_suffix, prefix.lib) + for f in glob.glob(join_path('libseq','*.h')): + install(f, prefix.include) + + # FIXME: extend the tests to mpirun -np 2 (or alike) when build with MPI + # FIXME: use something like numdiff to compare blessed output with the current + with working_dir('examples'): + if '+float' in spec: + os.system('./ssimpletest < input_simpletest_real') + if '+complex' in spec: + os.system('./csimpletest < input_simpletest_real') + if '+double' in spec: + os.system('./dsimpletest < input_simpletest_real') + if '+complex' in spec: + os.system('./zsimpletest < input_simpletest_cmplx') |