1 files changed, 46 insertions, 0 deletions
diff --git a/var/spack/repos/builtin/packages/ncbi-toolkit/package.py b/var/spack/repos/builtin/packages/ncbi-toolkit/package.py
new file mode 100644
index 0000000000..3f1bc0d543
--- /dev/null
+++ b/var/spack/repos/builtin/packages/ncbi-toolkit/package.py
@@ -0,0 +1,46 @@
+# Copyright 2013-2018 Lawrence Livermore National Security, LLC and other
+# Spack Project Developers. See the top-level COPYRIGHT file for details.
+#
+# SPDX-License-Identifier: (Apache-2.0 OR MIT)
+
+from spack import *
+
+
+class NcbiToolkit(AutotoolsPackage):
+    """NCBI C++ Toolkit"""
+
+    homepage = "https://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/"
+    url      = "ftp://ftp.ncbi.nih.gov/toolbox/ncbi_tools++/CURRENT/ncbi_cxx--21_0_0.tar.gz"
+
+    version('21_0_0', '14e021e08b1a78ac9cde98d0cab92098')
+
+    depends_on('boost@1.35.0:')
+    depends_on('bzip2')
+    depends_on('libjpeg')
+    depends_on('libpng')
+    depends_on('libtiff')
+    depends_on('libxml2')
+    depends_on('libxslt@1.1.14:')
+    depends_on('lzo')
+    depends_on('pcre')
+    depends_on('giflib')
+    depends_on('sqlite@3.6.6:')
+    depends_on('zlib')
+    depends_on('samtools')
+    depends_on('bamtools')
+
+    def configure_args(self):
+        return ['--without-sybase', '--without-fastcgi']
+
+    def patch(self):
+        with working_dir(join_path('src', 'util', 'image')):
+            filter_file(r'jpeg_start_compress(&cinfo, true)',
+                        'jpeg_start_compress(&cinfo, TRUE)',
+                        'image_io_jpeg.cpp', string=True)
+
+    def build(self, spec, prefix):
+        compiler_version = self.compiler.version.joined
+
+        with working_dir(join_path(
+                'GCC{0}-DebugMT64'.format(compiler_version), 'build')):
+            make('all_r')