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Diffstat (limited to 'var/spack/repos/builtin/packages/nextdenovo/package.py')
| -rw-r--r-- | var/spack/repos/builtin/packages/nextdenovo/package.py | 29 |
1 files changed, 29 insertions, 0 deletions
diff --git a/var/spack/repos/builtin/packages/nextdenovo/package.py b/var/spack/repos/builtin/packages/nextdenovo/package.py new file mode 100644 index 0000000000..51748f0e3a --- /dev/null +++ b/var/spack/repos/builtin/packages/nextdenovo/package.py @@ -0,0 +1,29 @@ +# Copyright 2013-2023 Lawrence Livermore National Security, LLC and other +# Spack Project Developers. See the top-level COPYRIGHT file for details. +# +# SPDX-License-Identifier: (Apache-2.0 OR MIT) + +from spack.package import * + + +class Nextdenovo(MakefilePackage): + """NextDenovo is a string graph-based de novo assembler for long reads.""" + + homepage = "https://nextdenovo.readthedocs.io/en/latest/index.html" + url = "https://github.com/Nextomics/NextDenovo/archive/refs/tags/2.5.2.tar.gz" + + version("2.5.2", sha256="f1d07c9c362d850fd737c41e5b5be9d137b1ef3f1aec369dc73c637790611190") + + depends_on("python", type="run") + depends_on("py-paralleltask", type="run") + + def edit(self, spec, prefix): + makefile = FileFilter("Makefile") + makefile.filter(r"^TOP_DIR.*", "TOP_DIR={0}".format(self.build_directory)) + runfile = FileFilter("nextDenovo") + runfile.filter(r"^SCRIPT_PATH.*", "SCRIPT_PATH = '{0}'".format(prefix)) + + def install(self, spec, prefix): + install_tree("bin", prefix.bin) + install("nextDenovo", prefix.bin) + install_tree("lib", prefix.lib) |