diff options
Diffstat (limited to 'var/spack/repos/builtin/packages/nseg/package.py')
| -rw-r--r-- | var/spack/repos/builtin/packages/nseg/package.py | 52 |
1 files changed, 26 insertions, 26 deletions
diff --git a/var/spack/repos/builtin/packages/nseg/package.py b/var/spack/repos/builtin/packages/nseg/package.py index 8bd391222b..65ff552181 100644 --- a/var/spack/repos/builtin/packages/nseg/package.py +++ b/var/spack/repos/builtin/packages/nseg/package.py @@ -10,62 +10,65 @@ class Nseg(MakefilePackage): """NSEG - Low complexity sequence identification""" homepage = "ftp://ftp.ncbi.nih.gov/pub/seg/nseg/" - url = "ftp://ftp.ncbi.nih.gov/pub/seg/nseg/nseg.c" + url = "ftp://ftp.ncbi.nih.gov/pub/seg/nseg/nseg.c" - version('1.0', sha256='afae364fbe51caa1eccb704ed0b954437a3ef48a0cd3bf473f4b61d6fde9617e', - expand=False) + version( + "1.0", + sha256="afae364fbe51caa1eccb704ed0b954437a3ef48a0cd3bf473f4b61d6fde9617e", + expand=False, + ) resource( - name='makefile', + name="makefile", url="ftp://ftp.ncbi.nih.gov/pub/seg/nseg/makefile", - sha256='32937aef6969550ca3c762b5dd61b1520635cc46e773e35e56c5718f75838cee', + sha256="32937aef6969550ca3c762b5dd61b1520635cc46e773e35e56c5718f75838cee", expand=False, ) resource( - name='genwin.c', + name="genwin.c", url="ftp://ftp.ncbi.nih.gov/pub/seg/nseg/genwin.c", - sha256='d392d2db625dc8c90b00f2a86028a3a45d121e15eb403b51c2f9b01692ab10d9', + sha256="d392d2db625dc8c90b00f2a86028a3a45d121e15eb403b51c2f9b01692ab10d9", expand=False, ) resource( - name='genwin.h', + name="genwin.h", url="ftp://ftp.ncbi.nih.gov/pub/seg/nseg/genwin.h", - sha256='1c701d87bf6200bfa40faa16fe665828a010727ef1aa0e8a1e5823605165fb86', + sha256="1c701d87bf6200bfa40faa16fe665828a010727ef1aa0e8a1e5823605165fb86", expand=False, ) resource( - name='lnfac.h', + name="lnfac.h", url="ftp://ftp.ncbi.nih.gov/pub/seg/nseg/lnfac.h", - sha256='5048e4f3dc3a7ea420d4eb4912a661f285634fbb205411b647b1f00c3fe3a0d2', + sha256="5048e4f3dc3a7ea420d4eb4912a661f285634fbb205411b647b1f00c3fe3a0d2", expand=False, ) resource( - name='nmerge.c', + name="nmerge.c", url="ftp://ftp.ncbi.nih.gov/pub/seg/nseg/nmerge.c", - sha256='c8a4bb4c960acf7fcd7509b635766b618efdab9f09aec36443040759eca3bce3', + sha256="c8a4bb4c960acf7fcd7509b635766b618efdab9f09aec36443040759eca3bce3", expand=False, ) resource( - name='runnseg', + name="runnseg", url="ftp://ftp.ncbi.nih.gov/pub/seg/nseg/runnseg", - sha256='2830a5a1c5ea1a879cf3a415dfbb23db7a81e84d41698ddf765f2e1ef42e7c78', + sha256="2830a5a1c5ea1a879cf3a415dfbb23db7a81e84d41698ddf765f2e1ef42e7c78", expand=False, ) - build_directory = 'nseg' + build_directory = "nseg" - @run_before('build') + @run_before("build") def prepare_source(self): # create the build dir mkdirp(self.build_directory) # move the primary source file in - copy('nseg.c', join_path(self.build_directory, 'nseg.c')) + copy("nseg.c", join_path(self.build_directory, "nseg.c")) # move all of the single-file resources into the build dir for key in self.resources: @@ -74,18 +77,15 @@ class Nseg(MakefilePackage): res_path = join_path(res.fetcher.stage.source_path, res.name) copy(res_path, join_path(self.build_directory, res_name)) - if self.spec.satisfies('%fj'): - sfiles = ['genwin.c', 'nseg.c'] + if self.spec.satisfies("%fj"): + sfiles = ["genwin.c", "nseg.c"] for s_name in sfiles: filter_file( - 'return;', - 'return 0;', - join_path(self.build_directory, s_name), - string=True + "return;", "return 0;", join_path(self.build_directory, s_name), string=True ) def install(self, spec, prefix): with working_dir(self.build_directory): mkdirp(prefix.bin) - install('nseg', prefix.bin) - install('nmerge', prefix.bin) + install("nseg", prefix.bin) + install("nmerge", prefix.bin) |