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-rw-r--r--var/spack/repos/builtin/packages/octave/package.py374
1 files changed, 195 insertions, 179 deletions
diff --git a/var/spack/repos/builtin/packages/octave/package.py b/var/spack/repos/builtin/packages/octave/package.py
index d2d3ac4bf6..176c0ffa57 100644
--- a/var/spack/repos/builtin/packages/octave/package.py
+++ b/var/spack/repos/builtin/packages/octave/package.py
@@ -24,124 +24,120 @@ class Octave(AutotoolsPackage, GNUMirrorPackage):
homepage = "https://www.gnu.org/software/octave/"
gnu_mirror_path = "octave/octave-4.0.0.tar.gz"
- maintainers = ['mtmiller', 'siko1056']
+ maintainers = ["mtmiller", "siko1056"]
extendable = True
- version('7.1.0', sha256='d4a9d81f3f67b4a6e07cb7a80dcb10ad5e9176fcc30762c70a81580a64b8b0b6')
- version('6.4.0', sha256='b48f33d4fceaf394cfbea73a8c850000936d83a41739a24f7568b5b0a7b39acd')
- version('6.3.0', sha256='232065f3a72fc3013fe9f17f429a3df69d672c1f6b6077029a31c8f3cd58a66e')
- version('6.2.0', sha256='457d1fda8634a839e2fd7cfc55b98bd56f36b6ae73d31bb9df43dde3012caa7c')
- version('6.1.0', sha256='6ff34e401658622c44094ecb67e497672e4337ca2d36c0702d0403ecc60b0a57')
- version('5.2.0', sha256='2fea62b3c78d6f38e9451da8a4d26023840725977dffee5250d3d180f56595e1')
- version('5.1.0', sha256='e36b1124cac27c7caa51cc57de408c31676d5f0096349b4d50b57bfe1bcd7495')
- version('4.4.1', sha256='09fbd0f212f4ef21e53f1d9c41cf30ce3d7f9450fb44911601e21ed64c67ae97')
- version('4.4.0', sha256='72f846379fcec7e813d46adcbacd069d72c4f4d8f6003bcd92c3513aafcd6e96')
- version('4.2.2', sha256='77b84395d8e7728a1ab223058fe5e92dc38c03bc13f7358e6533aab36f76726e')
- version('4.2.1', sha256='80c28f6398576b50faca0e602defb9598d6f7308b0903724442c2a35a605333b')
- version('4.2.0', sha256='443ba73782f3531c94bcf016f2f0362a58e186ddb8269af7dcce973562795567')
- version('4.0.2', sha256='39cd8fd36c218fc00adace28d74a6c7c9c6faab7113a5ba3c4372324c755bdc1')
- version('4.0.0', sha256='4c7ee0957f5dd877e3feb9dfe07ad5f39b311f9373932f0d2a289dc97cca3280')
+ version("7.1.0", sha256="d4a9d81f3f67b4a6e07cb7a80dcb10ad5e9176fcc30762c70a81580a64b8b0b6")
+ version("6.4.0", sha256="b48f33d4fceaf394cfbea73a8c850000936d83a41739a24f7568b5b0a7b39acd")
+ version("6.3.0", sha256="232065f3a72fc3013fe9f17f429a3df69d672c1f6b6077029a31c8f3cd58a66e")
+ version("6.2.0", sha256="457d1fda8634a839e2fd7cfc55b98bd56f36b6ae73d31bb9df43dde3012caa7c")
+ version("6.1.0", sha256="6ff34e401658622c44094ecb67e497672e4337ca2d36c0702d0403ecc60b0a57")
+ version("5.2.0", sha256="2fea62b3c78d6f38e9451da8a4d26023840725977dffee5250d3d180f56595e1")
+ version("5.1.0", sha256="e36b1124cac27c7caa51cc57de408c31676d5f0096349b4d50b57bfe1bcd7495")
+ version("4.4.1", sha256="09fbd0f212f4ef21e53f1d9c41cf30ce3d7f9450fb44911601e21ed64c67ae97")
+ version("4.4.0", sha256="72f846379fcec7e813d46adcbacd069d72c4f4d8f6003bcd92c3513aafcd6e96")
+ version("4.2.2", sha256="77b84395d8e7728a1ab223058fe5e92dc38c03bc13f7358e6533aab36f76726e")
+ version("4.2.1", sha256="80c28f6398576b50faca0e602defb9598d6f7308b0903724442c2a35a605333b")
+ version("4.2.0", sha256="443ba73782f3531c94bcf016f2f0362a58e186ddb8269af7dcce973562795567")
+ version("4.0.2", sha256="39cd8fd36c218fc00adace28d74a6c7c9c6faab7113a5ba3c4372324c755bdc1")
+ version("4.0.0", sha256="4c7ee0957f5dd877e3feb9dfe07ad5f39b311f9373932f0d2a289dc97cca3280")
# patches
# see https://savannah.gnu.org/bugs/?50234
- patch('patch_4.2.1_inline.diff', when='@4.2.1')
+ patch("patch_4.2.1_inline.diff", when="@4.2.1")
# Variants
- variant('readline', default=True)
- variant('bz2', default=True)
- variant('arpack', default=False)
- variant('curl', default=False)
- variant('fftw', default=False)
- variant('fltk', default=False)
- variant('fontconfig', default=False)
- variant('freetype', default=False)
- variant('glpk', default=False)
- variant('gl2ps', default=False)
- variant('gnuplot', default=False)
- variant('magick', default=False)
- variant('hdf5', default=False)
- variant('jdk', default=False)
- variant('llvm', default=False)
- variant('opengl', default=False)
- variant('qhull', default=False)
- variant('qrupdate', default=False)
- variant('qscintilla', default=False)
- variant('qt', default=False)
- variant('suitesparse', default=False)
- variant('zlib', default=False)
+ variant("readline", default=True)
+ variant("bz2", default=True)
+ variant("arpack", default=False)
+ variant("curl", default=False)
+ variant("fftw", default=False)
+ variant("fltk", default=False)
+ variant("fontconfig", default=False)
+ variant("freetype", default=False)
+ variant("glpk", default=False)
+ variant("gl2ps", default=False)
+ variant("gnuplot", default=False)
+ variant("magick", default=False)
+ variant("hdf5", default=False)
+ variant("jdk", default=False)
+ variant("llvm", default=False)
+ variant("opengl", default=False)
+ variant("qhull", default=False)
+ variant("qrupdate", default=False)
+ variant("qscintilla", default=False)
+ variant("qt", default=False)
+ variant("suitesparse", default=False)
+ variant("zlib", default=False)
# Required dependencies
- depends_on('blas')
- depends_on('lapack')
+ depends_on("blas")
+ depends_on("lapack")
# Octave does not configure with sed from darwin:
- depends_on('sed', when=sys.platform == 'darwin', type='build')
- depends_on('pcre')
- depends_on('pkgconfig', type='build')
- depends_on('texinfo', type='build')
+ depends_on("sed", when=sys.platform == "darwin", type="build")
+ depends_on("pcre")
+ depends_on("pkgconfig", type="build")
+ depends_on("texinfo", type="build")
# Strongly recommended dependencies
- depends_on('readline', when='+readline')
- depends_on('bzip2', when='+bz2')
+ depends_on("readline", when="+readline")
+ depends_on("bzip2", when="+bz2")
# Optional dependencies
- depends_on('arpack-ng', when='+arpack')
- depends_on('curl', when='+curl')
- depends_on('fftw', when='+fftw')
- depends_on('fltk', when='+fltk')
- depends_on('fontconfig', when='+fontconfig')
- depends_on('freetype', when='+freetype')
- depends_on('glpk', when='+glpk')
- depends_on('gl2ps', when='+gl2ps')
- depends_on('gnuplot', when='+gnuplot')
- depends_on('imagemagick', when='+magick')
- depends_on('hdf5', when='+hdf5')
- depends_on('java', when='+jdk') # TODO: requires Java 6 ?
- depends_on('llvm', when='+llvm')
- depends_on('gl', when='+opengl')
- depends_on('gl', when='+fltk')
- depends_on('qhull', when='+qhull')
- depends_on('qrupdate', when='+qrupdate')
- depends_on('qscintilla', when='+qscintilla')
- depends_on('qt+opengl', when='+qt')
- depends_on('suite-sparse', when='+suitesparse')
- depends_on('zlib', when='+zlib')
+ depends_on("arpack-ng", when="+arpack")
+ depends_on("curl", when="+curl")
+ depends_on("fftw", when="+fftw")
+ depends_on("fltk", when="+fltk")
+ depends_on("fontconfig", when="+fontconfig")
+ depends_on("freetype", when="+freetype")
+ depends_on("glpk", when="+glpk")
+ depends_on("gl2ps", when="+gl2ps")
+ depends_on("gnuplot", when="+gnuplot")
+ depends_on("imagemagick", when="+magick")
+ depends_on("hdf5", when="+hdf5")
+ depends_on("java", when="+jdk") # TODO: requires Java 6 ?
+ depends_on("llvm", when="+llvm")
+ depends_on("gl", when="+opengl")
+ depends_on("gl", when="+fltk")
+ depends_on("qhull", when="+qhull")
+ depends_on("qrupdate", when="+qrupdate")
+ depends_on("qscintilla", when="+qscintilla")
+ depends_on("qt+opengl", when="+qt")
+ depends_on("suite-sparse", when="+suitesparse")
+ depends_on("zlib", when="+zlib")
def patch(self):
# Filter mkoctfile.in.cc to use underlying compilers and not
# Spack compiler wrappers. We are patching the template file
# and not mkoctfile.cc since the latter is generated as part
# of the build.
- mkoctfile_in = os.path.join(
- self.stage.source_path, 'src', 'mkoctfile.in.cc'
- )
+ mkoctfile_in = os.path.join(self.stage.source_path, "src", "mkoctfile.in.cc")
quote = lambda s: '"' + s + '"'
entries_to_patch = {
- r'%OCTAVE_CONF_MKOCTFILE_CC%': quote(self.compiler.cc),
- r'%OCTAVE_CONF_MKOCTFILE_CXX%': quote(self.compiler.cxx),
- r'%OCTAVE_CONF_MKOCTFILE_F77%': quote(self.compiler.f77),
- r'%OCTAVE_CONF_MKOCTFILE_DL_LD%': quote(self.compiler.cxx),
- r'%OCTAVE_CONF_MKOCTFILE_LD_CXX%': quote(self.compiler.cxx)
+ r"%OCTAVE_CONF_MKOCTFILE_CC%": quote(self.compiler.cc),
+ r"%OCTAVE_CONF_MKOCTFILE_CXX%": quote(self.compiler.cxx),
+ r"%OCTAVE_CONF_MKOCTFILE_F77%": quote(self.compiler.f77),
+ r"%OCTAVE_CONF_MKOCTFILE_DL_LD%": quote(self.compiler.cxx),
+ r"%OCTAVE_CONF_MKOCTFILE_LD_CXX%": quote(self.compiler.cxx),
}
for pattern, subst in entries_to_patch.items():
filter_file(pattern, subst, mkoctfile_in)
- @run_after('install')
+ @run_after("install")
@on_package_attributes(run_tests=True)
def check_mkoctfile_works_outside_of_build_env(self):
# Check that mkoctfile is properly configured and can compile
# Octave extensions outside of the build env
- mkoctfile = Executable(os.path.join(self.prefix, 'bin', 'mkoctfile'))
- helloworld_cc = os.path.join(
- os.path.dirname(__file__), 'helloworld.cc'
- )
+ mkoctfile = Executable(os.path.join(self.prefix, "bin", "mkoctfile"))
+ helloworld_cc = os.path.join(os.path.dirname(__file__), "helloworld.cc")
tmp_dir = tempfile.mkdtemp()
shutil.copy(helloworld_cc, tmp_dir)
# We need to unset these variables since we are still within
# Spack's build environment when running tests
- vars_to_unset = ['CC', 'CXX', 'F77', 'FC']
+ vars_to_unset = ["CC", "CXX", "F77", "FC"]
with spack.util.environment.preserve_environment(*vars_to_unset):
# Delete temporarily the environment variables that point
@@ -149,14 +145,14 @@ class Octave(AutotoolsPackage, GNUMirrorPackage):
for v in vars_to_unset:
del os.environ[v]
# Check that mkoctfile outputs the expected value for CC
- cc = mkoctfile('-p', 'CC', output=str)
+ cc = mkoctfile("-p", "CC", output=str)
msg = "mkoctfile didn't output the expected CC compiler"
assert self.compiler.cc in cc, msg
# Try to compile an Octave extension
shutil.copy(helloworld_cc, tmp_dir)
with working_dir(tmp_dir):
- mkoctfile('helloworld.cc')
+ mkoctfile("helloworld.cc")
def configure_args(self):
# See
@@ -167,149 +163,169 @@ class Octave(AutotoolsPackage, GNUMirrorPackage):
config_args = []
# Required dependencies
- if '^mkl' in spec and 'gfortran' in self.compiler.fc:
- mkl_re = re.compile(r'(mkl_)intel(_i?lp64\b)')
- config_args.extend([
- mkl_re.sub(r'\g<1>gf\g<2>',
- '--with-blas={0}'.format(
- spec['blas'].libs.ld_flags)),
- '--with-lapack'
- ])
+ if "^mkl" in spec and "gfortran" in self.compiler.fc:
+ mkl_re = re.compile(r"(mkl_)intel(_i?lp64\b)")
+ config_args.extend(
+ [
+ mkl_re.sub(
+ r"\g<1>gf\g<2>", "--with-blas={0}".format(spec["blas"].libs.ld_flags)
+ ),
+ "--with-lapack",
+ ]
+ )
else:
- config_args.extend([
- '--with-blas={0}'.format(spec['blas'].libs.ld_flags),
- '--with-lapack={0}'.format(spec['lapack'].libs.ld_flags)
- ])
+ config_args.extend(
+ [
+ "--with-blas={0}".format(spec["blas"].libs.ld_flags),
+ "--with-lapack={0}".format(spec["lapack"].libs.ld_flags),
+ ]
+ )
# Strongly recommended dependencies
- if '+readline' in spec:
- config_args.append('--enable-readline')
+ if "+readline" in spec:
+ config_args.append("--enable-readline")
else:
- config_args.append('--disable-readline')
-
- if '+bz2' in spec:
- config_args.extend([
- "--with-bz2-includedir=%s" % spec['bzip2'].prefix.include,
- "--with-bz2-libdir=%s" % spec['bzip2'].prefix.lib
- ])
+ config_args.append("--disable-readline")
+
+ if "+bz2" in spec:
+ config_args.extend(
+ [
+ "--with-bz2-includedir=%s" % spec["bzip2"].prefix.include,
+ "--with-bz2-libdir=%s" % spec["bzip2"].prefix.lib,
+ ]
+ )
else:
config_args.append("--without-bz2")
# Optional dependencies
- if '+arpack' in spec:
- sa = spec['arpack-ng']
- config_args.extend([
- "--with-arpack-includedir=%s" % sa.prefix.include,
- "--with-arpack-libdir=%s" % sa.prefix.lib
- ])
+ if "+arpack" in spec:
+ sa = spec["arpack-ng"]
+ config_args.extend(
+ [
+ "--with-arpack-includedir=%s" % sa.prefix.include,
+ "--with-arpack-libdir=%s" % sa.prefix.lib,
+ ]
+ )
else:
config_args.append("--without-arpack")
- if '+curl' in spec:
- config_args.extend([
- "--with-curl-includedir=%s" % spec['curl'].prefix.include,
- "--with-curl-libdir=%s" % spec['curl'].prefix.lib
- ])
+ if "+curl" in spec:
+ config_args.extend(
+ [
+ "--with-curl-includedir=%s" % spec["curl"].prefix.include,
+ "--with-curl-libdir=%s" % spec["curl"].prefix.lib,
+ ]
+ )
else:
config_args.append("--without-curl")
- if '+fftw' in spec:
- config_args.extend([
- "--with-fftw3-includedir=%s" % spec['fftw'].prefix.include,
- "--with-fftw3-libdir=%s" % spec['fftw'].prefix.lib,
- "--with-fftw3f-includedir=%s" % spec['fftw'].prefix.include,
- "--with-fftw3f-libdir=%s" % spec['fftw'].prefix.lib
- ])
+ if "+fftw" in spec:
+ config_args.extend(
+ [
+ "--with-fftw3-includedir=%s" % spec["fftw"].prefix.include,
+ "--with-fftw3-libdir=%s" % spec["fftw"].prefix.lib,
+ "--with-fftw3f-includedir=%s" % spec["fftw"].prefix.include,
+ "--with-fftw3f-libdir=%s" % spec["fftw"].prefix.lib,
+ ]
+ )
else:
- config_args.extend([
- "--without-fftw3",
- "--without-fftw3f"
- ])
-
- if '+fltk' in spec:
- config_args.extend([
- "--with-fltk-prefix=%s" % spec['fltk'].prefix,
- "--with-fltk-exec-prefix=%s" % spec['fltk'].prefix
- ])
+ config_args.extend(["--without-fftw3", "--without-fftw3f"])
+
+ if "+fltk" in spec:
+ config_args.extend(
+ [
+ "--with-fltk-prefix=%s" % spec["fltk"].prefix,
+ "--with-fltk-exec-prefix=%s" % spec["fltk"].prefix,
+ ]
+ )
else:
config_args.append("--without-fltk")
- if '+glpk' in spec:
- config_args.extend([
- "--with-glpk-includedir=%s" % spec['glpk'].prefix.include,
- "--with-glpk-libdir=%s" % spec['glpk'].prefix.lib
- ])
+ if "+glpk" in spec:
+ config_args.extend(
+ [
+ "--with-glpk-includedir=%s" % spec["glpk"].prefix.include,
+ "--with-glpk-libdir=%s" % spec["glpk"].prefix.lib,
+ ]
+ )
else:
config_args.append("--without-glpk")
- if '+magick' in spec:
- config_args.append("--with-magick=%s"
- % spec['imagemagick'].prefix.lib)
+ if "+magick" in spec:
+ config_args.append("--with-magick=%s" % spec["imagemagick"].prefix.lib)
else:
config_args.append("--without-magick")
- if '+hdf5' in spec:
- config_args.extend([
- "--with-hdf5-includedir=%s" % spec['hdf5'].prefix.include,
- "--with-hdf5-libdir=%s" % spec['hdf5'].prefix.lib
- ])
+ if "+hdf5" in spec:
+ config_args.extend(
+ [
+ "--with-hdf5-includedir=%s" % spec["hdf5"].prefix.include,
+ "--with-hdf5-libdir=%s" % spec["hdf5"].prefix.lib,
+ ]
+ )
else:
config_args.append("--without-hdf5")
- if '+jdk' in spec:
- config_args.extend([
- "--with-java-homedir=%s" % spec['java'].home,
- "--with-java-includedir=%s" % spec['java'].home.include,
- "--with-java-libdir=%s" % spec['java'].libs.directories[0]
- ])
+ if "+jdk" in spec:
+ config_args.extend(
+ [
+ "--with-java-homedir=%s" % spec["java"].home,
+ "--with-java-includedir=%s" % spec["java"].home.include,
+ "--with-java-libdir=%s" % spec["java"].libs.directories[0],
+ ]
+ )
else:
config_args.append("--disable-java")
- if '~opengl' and '~fltk' in spec:
- config_args.extend([
- "--without-opengl",
- "--without-framework-opengl"
- ])
+ if "~opengl" and "~fltk" in spec:
+ config_args.extend(["--without-opengl", "--without-framework-opengl"])
# TODO: opengl dependency and package is missing?
- if '+qhull' in spec:
- config_args.extend([
- "--with-qhull-includedir=%s" % spec['qhull'].prefix.include,
- "--with-qhull-libdir=%s" % spec['qhull'].prefix.lib
- ])
+ if "+qhull" in spec:
+ config_args.extend(
+ [
+ "--with-qhull-includedir=%s" % spec["qhull"].prefix.include,
+ "--with-qhull-libdir=%s" % spec["qhull"].prefix.lib,
+ ]
+ )
else:
config_args.append("--without-qhull")
- if '+qrupdate' in spec:
- config_args.extend([
- "--with-qrupdate-includedir=%s"
- % spec['qrupdate'].prefix.include,
- "--with-qrupdate-libdir=%s" % spec['qrupdate'].prefix.lib
- ])
+ if "+qrupdate" in spec:
+ config_args.extend(
+ [
+ "--with-qrupdate-includedir=%s" % spec["qrupdate"].prefix.include,
+ "--with-qrupdate-libdir=%s" % spec["qrupdate"].prefix.lib,
+ ]
+ )
else:
config_args.append("--without-qrupdate")
config_args += self.with_or_without("qscintilla")
- if '+zlib' in spec:
- config_args.extend([
- "--with-z-includedir=%s" % spec['zlib'].prefix.include,
- "--with-z-libdir=%s" % spec['zlib'].prefix.lib
- ])
+ if "+zlib" in spec:
+ config_args.extend(
+ [
+ "--with-z-includedir=%s" % spec["zlib"].prefix.include,
+ "--with-z-libdir=%s" % spec["zlib"].prefix.lib,
+ ]
+ )
else:
config_args.append("--without-z")
# If 64-bit BLAS is used:
- if (spec.satisfies('^openblas+ilp64') or
- spec.satisfies('^intel-mkl+ilp64') or
- spec.satisfies('^intel-parallel-studio+mkl+ilp64')):
- config_args.append('F77_INTEGER_8_FLAG=-fdefault-integer-8')
+ if (
+ spec.satisfies("^openblas+ilp64")
+ or spec.satisfies("^intel-mkl+ilp64")
+ or spec.satisfies("^intel-parallel-studio+mkl+ilp64")
+ ):
+ config_args.append("F77_INTEGER_8_FLAG=-fdefault-integer-8")
# Use gfortran calling-convention
- config_args.append('--enable-fortran-calling-convention=gfortran')
+ config_args.append("--enable-fortran-calling-convention=gfortran")
# Make sure we do not use qtchooser
- config_args.append('ac_cv_prog_ac_ct_QTCHOOSER=')
+ config_args.append("ac_cv_prog_ac_ct_QTCHOOSER=")
return config_args
@@ -324,4 +340,4 @@ class Octave(AutotoolsPackage, GNUMirrorPackage):
octave('--eval', 'pkg install %s' % self.stage.archive_file)
"""
# Octave extension builds can have a global Octave executable function
- module.octave = Executable(join_path(self.spec.prefix.bin, 'octave'))
+ module.octave = Executable(join_path(self.spec.prefix.bin, "octave"))