diff options
Diffstat (limited to 'var/spack/repos/builtin/packages/orthofiller/package.py')
| -rw-r--r-- | var/spack/repos/builtin/packages/orthofiller/package.py | 32 |
1 files changed, 16 insertions, 16 deletions
diff --git a/var/spack/repos/builtin/packages/orthofiller/package.py b/var/spack/repos/builtin/packages/orthofiller/package.py index 3d9c5ff9c4..9d73e3f04d 100644 --- a/var/spack/repos/builtin/packages/orthofiller/package.py +++ b/var/spack/repos/builtin/packages/orthofiller/package.py @@ -10,30 +10,30 @@ from spack.package import * class Orthofiller(Package): """OrthoFiller: Identifying missing annotations for evolutionarily - conserved genes.""" + conserved genes.""" homepage = "https://github.com/mpdunne/orthofiller/" - url = "https://github.com/mpdunne/orthofiller/archive/1.1.4.tar.gz" + url = "https://github.com/mpdunne/orthofiller/archive/1.1.4.tar.gz" - version('1.1.4', sha256='a693a3372a3f05041ce30cbf84da1be88e85eae4effe32dbd7809ccef119a295') + version("1.1.4", sha256="a693a3372a3f05041ce30cbf84da1be88e85eae4effe32dbd7809ccef119a295") - depends_on('augustus', type='run') - depends_on('bedtools2@2.25.0', type='run') - depends_on('hmmer', type='run') - depends_on('orthofinder', type='run') - depends_on('python@2.7:', type='run') - depends_on('py-biopython', type='run') - depends_on('py-scipy', type='run') - depends_on('r', type='run') - depends_on('r-gamlss', type='run') - depends_on('mafft', type='run') + depends_on("augustus", type="run") + depends_on("bedtools2@2.25.0", type="run") + depends_on("hmmer", type="run") + depends_on("orthofinder", type="run") + depends_on("python@2.7:", type="run") + depends_on("py-biopython", type="run") + depends_on("py-scipy", type="run") + depends_on("r", type="run") + depends_on("r-gamlss", type="run") + depends_on("mafft", type="run") def install(self, spec, prefix): # orthofiller tests for common unix programs using man # runtime modules will quickly overflow the maximum MANPATH; # we change the man tests to use which instead, more reliable anyway - filter_file('"man "', '"which "', 'OrthoFiller.py', string=True) + filter_file('"man "', '"which "', "OrthoFiller.py", string=True) - os.chmod('OrthoFiller.py', 0o755) + os.chmod("OrthoFiller.py", 0o755) mkdirp(prefix.bin) - install('OrthoFiller.py', prefix.bin) + install("OrthoFiller.py", prefix.bin) |