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Diffstat (limited to 'var/spack/repos/builtin/packages/orthofinder/package.py')
| -rw-r--r-- | var/spack/repos/builtin/packages/orthofinder/package.py | 34 |
1 files changed, 34 insertions, 0 deletions
diff --git a/var/spack/repos/builtin/packages/orthofinder/package.py b/var/spack/repos/builtin/packages/orthofinder/package.py new file mode 100644 index 0000000000..f89eddf6c8 --- /dev/null +++ b/var/spack/repos/builtin/packages/orthofinder/package.py @@ -0,0 +1,34 @@ +# Copyright 2013-2018 Lawrence Livermore National Security, LLC and other +# Spack Project Developers. See the top-level COPYRIGHT file for details. +# +# SPDX-License-Identifier: (Apache-2.0 OR MIT) + +from spack import * + + +class Orthofinder(Package): + """OrthoFinder is a fast, accurate and comprehensive analysis tool for + comparative genomics. + + It finds orthologues and orthogroups infers rooted gene trees for all + orthogroups and infers a rooted species tree for the species being + analysed. OrthoFinder also provides comprehensive statistics for + comparative genomic analyses. OrthoFinder is simple to use and all you + need to run it is a set of protein sequence files (one per species) + in FASTA format.""" + + homepage = "https://github.com/davidemms/OrthoFinder" + url = "https://github.com/davidemms/OrthoFinder/releases/download/2.2.0/OrthoFinder-2.2.0.tar.gz" + + version('2.2.0', '4ff585e1eb148fc694a219296fbdd431') + + depends_on('blast-plus', type='run') + depends_on('mcl', type='run') + depends_on('fastme', type='run') + depends_on('py-dlcpar', type='run') + + def install(self, spec, prefix): + install_tree('.', prefix.bin) + + chmod = which('chmod') + chmod('+x', join_path(prefix.bin, 'orthofinder')) |