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-rw-r--r--var/spack/repos/builtin/packages/petsc/package.py152
1 files changed, 108 insertions, 44 deletions
diff --git a/var/spack/repos/builtin/packages/petsc/package.py b/var/spack/repos/builtin/packages/petsc/package.py
index 838369f4e4..8be5d8cce5 100644
--- a/var/spack/repos/builtin/packages/petsc/package.py
+++ b/var/spack/repos/builtin/packages/petsc/package.py
@@ -1,27 +1,8 @@
-##############################################################################
-# Copyright (c) 2013-2017, Lawrence Livermore National Security, LLC.
-# Produced at the Lawrence Livermore National Laboratory.
+# Copyright 2013-2018 Lawrence Livermore National Security, LLC and other
+# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
-# This file is part of Spack.
-# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
-# LLNL-CODE-647188
-#
-# For details, see https://github.com/spack/spack
-# Please also see the NOTICE and LICENSE files for our notice and the LGPL.
-#
-# This program is free software; you can redistribute it and/or modify
-# it under the terms of the GNU Lesser General Public License (as
-# published by the Free Software Foundation) version 2.1, February 1999.
-#
-# This program is distributed in the hope that it will be useful, but
-# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
-# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
-# conditions of the GNU Lesser General Public License for more details.
-#
-# You should have received a copy of the GNU Lesser General Public
-# License along with this program; if not, write to the Free Software
-# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
-##############################################################################
+# SPDX-License-Identifier: (Apache-2.0 OR MIT)
+
import os
import sys
@@ -35,13 +16,24 @@ class Petsc(Package):
"""
homepage = "http://www.mcs.anl.gov/petsc/index.html"
- url = "http://ftp.mcs.anl.gov/pub/petsc/release-snapshots/petsc-3.5.3.tar.gz"
+ url = "http://ftp.mcs.anl.gov/pub/petsc/release-snapshots/petsc-3.5.3.tar.gz"
+ git = "https://bitbucket.org/petsc/petsc.git"
- maintainers = ['balay', 'barrysmith']
+ maintainers = ['balay', 'barrysmith', 'jedbrown']
- version('develop', git='https://bitbucket.org/petsc/petsc.git', tag='master')
- version('xsdk-0.2.0', git='https://bitbucket.org/petsc/petsc.git', tag='xsdk-0.2.0')
+ version('develop', branch='master')
+ version('xsdk-0.2.0', tag='xsdk-0.2.0')
+ version('3.10.2', '63ed950653ae9b8d19daea47e24c0338')
+ version('3.10.1', '2d0d5a9bd8112a4147a2a23f7f62a906')
+ version('3.10.0', '0240c2ce8c54e47b3531a743ee844d41')
+ version('3.9.4', 'c98eb67573efb2f91c6f239368259e44')
+ version('3.9.3', '7b71d705f66f9961cb0e2da3f9da79a1')
+ version('3.9.2', '8bedc0cd8c8603d54bfd99a6e8f77b3d')
+ version('3.9.1', 'd3a229a188dbeef9b3f29b9a63622fad')
+ version('3.9.0', '34b8a81814ca050a96d58e53a2f0ac7a')
+ version('3.8.4', 'd7767fe2919536aa393eb22841899306')
+ version('3.8.3', '322cbcf2a0f7b7bad562643b05d66f11')
version('3.8.2', '00666e1c4cbfa8dd6eebf91ff8180f79')
version('3.8.1', '3ed75c1147800fc156fe1f1e515a68a7')
version('3.8.0', '02680f1f78a0d4c5a9de80a366793eb8')
@@ -69,7 +61,6 @@ class Petsc(Package):
description='Activates support for metis and parmetis')
variant('hdf5', default=True,
description='Activates support for HDF5 (only parallel)')
- variant('boost', default=True, description='Activates support for Boost')
variant('hypre', default=True,
description='Activates support for Hypre (only parallel)')
# Mumps is disabled by default, because it depends on Scalapack
@@ -83,6 +74,11 @@ class Petsc(Package):
description='Activates support for Trilinos (only parallel)')
variant('int64', default=False,
description='Compile with 64bit indices')
+ variant('clanguage', default='C', values=('C', 'C++'),
+ description='Specify C (recommended) or C++ to compile PETSc',
+ multi=False)
+ variant('suite-sparse', default=False,
+ description='Activates support for SuiteSparse')
# 3.8.0 has a build issue with MKL - so list this conflict explicitly
conflicts('^intel-mkl', when='@3.8.0')
@@ -93,6 +89,7 @@ class Petsc(Package):
if sys.platform == "darwin":
patch('macos-clang-8.1.0.diff',
when='@3.7.5%clang@8.1.0:')
+ patch('pkg-config-3.7.6-3.8.4.diff', when='@3.7.6:3.8.4')
# Virtual dependencies
# Git repository needs sowing to build Fortran interface
@@ -108,11 +105,13 @@ class Petsc(Package):
depends_on('python@2.6:2.8', type='build')
# Other dependencies
- depends_on('boost', when='@:3.5+boost')
- depends_on('metis@5:~int64+real64', when='+metis~int64+double')
- depends_on('metis@5:+int64', when='+metis+int64~double')
- depends_on('metis@5:~int64+real64', when='+metis~int64+double')
- depends_on('metis@5:+int64', when='+metis+int64~double')
+ depends_on('metis@5:~int64+real64', when='@:3.7.99+metis~int64+double')
+ depends_on('metis@5:~int64', when='@:3.7.99+metis~int64~double')
+ depends_on('metis@5:+int64+real64', when='@:3.7.99+metis+int64+double')
+ depends_on('metis@5:+int64', when='@:3.7.99+metis+int64~double')
+ # petsc-3.8+ uses default (float) metis with any (petsc) precision
+ depends_on('metis@5:~int64', when='@3.8:+metis~int64')
+ depends_on('metis@5:+int64', when='@3.8:+metis+int64')
depends_on('hdf5+mpi+hl', when='+hdf5+mpi')
depends_on('zlib', when='+hdf5')
@@ -121,18 +120,22 @@ class Petsc(Package):
# Also PETSc prefer to build it without internal superlu, likely due to
# conflict in headers see
# https://bitbucket.org/petsc/petsc/src/90564b43f6b05485163c147b464b5d6d28cde3ef/config/BuildSystem/config/packages/hypre.py
- depends_on('hypre~internal-superlu~int64', when='+hypre+mpi~complex~int64')
+ depends_on('hypre@:2.13.99~internal-superlu~int64', when='@:3.8.99+hypre+mpi~complex~int64')
+ depends_on('hypre@:2.13.99~internal-superlu+int64', when='@:3.8.99+hypre+mpi~complex+int64')
+ depends_on('hypre@2.14:~internal-superlu~int64', when='@3.9:+hypre+mpi~complex~int64')
+ depends_on('hypre@2.14:~internal-superlu+int64', when='@3.9+hypre+mpi~complex+int64')
depends_on('hypre@xsdk-0.2.0~internal-superlu+int64', when='@xsdk-0.2.0+hypre+mpi~complex+int64')
depends_on('hypre@xsdk-0.2.0~internal-superlu~int64', when='@xsdk-0.2.0+hypre+mpi~complex~int64')
depends_on('hypre@develop~internal-superlu+int64', when='@develop+hypre+mpi~complex+int64')
depends_on('hypre@develop~internal-superlu~int64', when='@develop+hypre+mpi~complex~int64')
- depends_on('hypre~internal-superlu+int64', when='+hypre+mpi~complex+int64')
depends_on('superlu-dist@:4.3~int64', when='@3.4.4:3.6.4+superlu-dist+mpi~int64')
depends_on('superlu-dist@:4.3+int64', when='@3.4.4:3.6.4+superlu-dist+mpi+int64')
depends_on('superlu-dist@5.0.0:~int64', when='@3.7:3.7.99+superlu-dist+mpi~int64')
depends_on('superlu-dist@5.0.0:+int64', when='@3.7:3.7.99+superlu-dist+mpi+int64')
- depends_on('superlu-dist@5.2:5.2.99~int64', when='@3.8:3.8.99+superlu-dist+mpi~int64')
- depends_on('superlu-dist@5.2:5.2.99+int64', when='@3.8:3.8.99+superlu-dist+mpi+int64')
+ depends_on('superlu-dist@5.2:5.2.99~int64', when='@3.8:3.9.99+superlu-dist+mpi~int64')
+ depends_on('superlu-dist@5.2:5.2.99+int64', when='@3.8:3.9.99+superlu-dist+mpi+int64')
+ depends_on('superlu-dist@5.4:5.4.99~int64', when='@3.10:3.10.99+superlu-dist+mpi~int64')
+ depends_on('superlu-dist@5.4:5.4.99+int64', when='@3.10:3.10.99+superlu-dist+mpi+int64')
depends_on('superlu-dist@xsdk-0.2.0~int64', when='@xsdk-0.2.0+superlu-dist+mpi~int64')
depends_on('superlu-dist@xsdk-0.2.0+int64', when='@xsdk-0.2.0+superlu-dist+mpi+int64')
depends_on('superlu-dist@develop~int64', when='@develop+superlu-dist+mpi~int64')
@@ -142,6 +145,7 @@ class Petsc(Package):
depends_on('trilinos@12.6.2:', when='@3.7.0:+trilinos+mpi')
depends_on('trilinos@xsdk-0.2.0', when='@xsdk-0.2.0+trilinos+mpi')
depends_on('trilinos@develop', when='@xdevelop+trilinos+mpi')
+ depends_on('suite-sparse', when='+suite-sparse')
def mpi_dependent_options(self):
if '~mpi' in self.spec:
@@ -169,8 +173,12 @@ class Petsc(Package):
compiler_opts = [
'--with-cc=%s' % self.spec['mpi'].mpicc,
'--with-cxx=%s' % self.spec['mpi'].mpicxx,
- '--with-fc=%s' % self.spec['mpi'].mpifc
+ '--with-fc=%s' % self.spec['mpi'].mpifc,
]
+ if self.spec.satisfies('%intel'):
+ # mpiifort needs some help to automatically link
+ # all necessary run-time libraries
+ compiler_opts.append('--FC_LINKER_FLAGS=-lintlc')
return compiler_opts
def install(self, spec, prefix):
@@ -178,7 +186,13 @@ class Petsc(Package):
'--with-x=0',
'--download-c2html=0',
'--download-sowing=0',
- '--download-hwloc=0']
+ '--download-hwloc=0',
+ 'CFLAGS=%s' % ' '.join(spec.compiler_flags['cflags']),
+ 'FFLAGS=%s' % ' '.join(spec.compiler_flags['fflags']),
+ 'CXXFLAGS=%s' % ' '.join(spec.compiler_flags['cxxflags']),
+ 'COPTFLAGS=',
+ 'FOPTFLAGS=',
+ 'CXXOPTFLAGS=']
options.extend(self.mpi_dependent_options())
options.extend([
'--with-precision=%s' % (
@@ -198,9 +212,17 @@ class Petsc(Package):
if 'trilinos' in spec:
options.append('--with-cxx-dialect=C++11')
+ if spec.satisfies('^trilinos+boost'):
+ options.append('--with-boost=1')
+
+ if self.spec.satisfies('clanguage=C++'):
+ options.append('--with-clanguage=C++')
+ else:
+ options.append('--with-clanguage=C')
- # Help PETSc pick up Scalapack from MKL:
- if 'scalapack' in spec:
+ # PETSc depends on scalapack when '+mumps+mpi~int64' (see depends())
+ # help PETSc pick up Scalapack from MKL
+ if spec.satisfies('+mumps+mpi~int64'):
scalapack = spec['scalapack'].libs
options.extend([
'--with-scalapack-lib=%s' % scalapack.joined(),
@@ -212,8 +234,8 @@ class Petsc(Package):
])
# Activates library support if needed
- for library in ('metis', 'boost', 'hdf5', 'hypre', 'parmetis',
- 'mumps', 'trilinos', 'zlib'):
+ for library in ('metis', 'hdf5', 'hypre', 'parmetis',
+ 'mumps', 'trilinos'):
options.append(
'--with-{library}={value}'.format(
library=library, value=('1' if library in spec else '0'))
@@ -238,8 +260,31 @@ class Petsc(Package):
options.append(
'--with-superlu_dist=0'
)
+ # SuiteSparse: configuring using '--with-suitesparse-dir=...' has some
+ # issues, so specify directly the include path and the libraries.
+ if '+suite-sparse' in spec:
+ ss_spec = 'suite-sparse:umfpack,klu,cholmod,btf,ccolamd,colamd,' \
+ 'camd,amd,suitesparseconfig'
+ options.extend([
+ '--with-suitesparse-include=%s' % spec[ss_spec].prefix.include,
+ '--with-suitesparse-lib=%s' % spec[ss_spec].libs.ld_flags,
+ '--with-suitesparse=1'
+ ])
+ else:
+ options.append('--with-suitesparse=0')
+
+ # zlib: configuring using '--with-zlib-dir=...' has some issues with
+ # SuiteSparse so specify directly the include path and the libraries.
+ if 'zlib' in spec:
+ options.extend([
+ '--with-zlib-include=%s' % spec['zlib'].prefix.include,
+ '--with-zlib-lib=%s' % spec['zlib'].libs.ld_flags,
+ '--with-zlib=1'
+ ])
+ else:
+ options.append('--with-zlib=0')
- configure('--prefix=%s' % prefix, *options)
+ python('configure', '--prefix=%s' % prefix, *options)
# PETSc has its own way of doing parallel make.
make('MAKE_NP=%s' % make_jobs, parallel=False)
@@ -253,6 +298,18 @@ class Petsc(Package):
cc('ex50.c', '-I%s' % prefix.include, '-L%s' % prefix.lib,
'-lpetsc', '-lm', '-o', 'ex50')
run = Executable(join_path(spec['mpi'].prefix.bin, 'mpirun'))
+ # For Spectrum MPI, if -np is omitted, the default behavior is
+ # to assign one process per process slot, where the default
+ # process slot allocation is one per core. On systems with
+ # many cores, the number of processes can exceed the size of
+ # the grid specified when the testcase is run and the test case
+ # fails. Specify a small number of processes to prevent
+ # failure.
+ # For more information about Spectrum MPI invocation, see URL
+ # https://www.ibm.com/support/knowledgecenter/en/SSZTET_10.1.0/smpi02/smpi02_mpirun_options.html
+ if ('spectrum-mpi' in spec):
+ run.add_default_arg('-np')
+ run.add_default_arg('4')
run('ex50', '-da_grid_x', '4', '-da_grid_y', '4')
if 'superlu-dist' in spec:
run('ex50',
@@ -288,3 +345,10 @@ class Petsc(Package):
# Set up PETSC_DIR for everyone using PETSc package
spack_env.set('PETSC_DIR', self.prefix)
spack_env.unset('PETSC_ARCH')
+
+ @property
+ def headers(self):
+ return find_headers('petsc', self.prefix.include, recursive=False) \
+ or None # return None to indicate failure
+
+ # For the 'libs' property - use the default handler.
generated by cgit v1.2.3-60-g2f50 (git 2.42.0) at 2024-06-28 10:22:29 +0000