1 files changed, 25 insertions, 0 deletions
diff --git a/var/spack/repos/builtin/packages/phantompeakqualtools/package.py b/var/spack/repos/builtin/packages/phantompeakqualtools/package.py
new file mode 100644
index 0000000000..118d7032c9
--- /dev/null
+++ b/var/spack/repos/builtin/packages/phantompeakqualtools/package.py
@@ -0,0 +1,25 @@
+# Copyright 2013-2018 Lawrence Livermore National Security, LLC and other
+# Spack Project Developers. See the top-level COPYRIGHT file for details.
+#
+# SPDX-License-Identifier: (Apache-2.0 OR MIT)
+
+from spack import *
+
+
+class Phantompeakqualtools(RPackage):
+    """This package computes informative enrichment and quality measures for
+       ChIP-seq/DNase-seq/FAIRE-seq/MNase-seq data."""
+
+    homepage = "https://github.com/kundajelab/phantompeakqualtools"
+    url      = "https://github.com/kundajelab/phantompeakqualtools/archive/1.2.tar.gz"
+
+    version('1.2', 'e94943a42132b9ff2886f006ab34c121')
+
+    depends_on('awk')
+    depends_on('samtools')
+    depends_on('r', type=('build', 'run'))
+    depends_on('r-phantompeakqualtools', type=('build', 'run'))
+
+    def install(self, spec, prefix):
+        mkdirp(prefix.bin)
+        install('run_spp.R', prefix.bin)