1 files changed, 39 insertions, 0 deletions
diff --git a/var/spack/repos/builtin/packages/phast/package.py b/var/spack/repos/builtin/packages/phast/package.py
new file mode 100644
index 0000000000..503246614c
--- /dev/null
+++ b/var/spack/repos/builtin/packages/phast/package.py
@@ -0,0 +1,39 @@
+# Copyright 2013-2018 Lawrence Livermore National Security, LLC and other
+# Spack Project Developers. See the top-level COPYRIGHT file for details.
+#
+# SPDX-License-Identifier: (Apache-2.0 OR MIT)
+
+from spack import *
+
+
+class Phast(MakefilePackage):
+    """PHAST is a freely available software package for comparative and
+       evolutionary genomics."""
+
+    homepage = "http://compgen.cshl.edu/phast/index.php"
+    url      = "https://github.com/CshlSiepelLab/phast/archive/v1.4.tar.gz"
+
+    version('1.4', '2bc0412ba58ea1f08ba5e12fad43b4c7')
+
+    # phast cannot build with clapack using external blas
+    depends_on('clapack~external-blas')
+
+    build_directory = 'src'
+
+    @property
+    def build_targets(self):
+        targets = ['CLAPACKPATH={0}'.format(self.spec['clapack'].prefix)]
+        return targets
+
+    def edit(self, spec, prefix):
+        with working_dir(self.build_directory):
+            filter_file(r'\$\{PWD\}',
+                        '$(dir $(realpath $(firstword $(MAKEFILE_LIST))))',
+                        'make-include.mk')
+            filter_file(r'\$\{PWD\}',
+                        '$(dir $(realpath $(firstword $(MAKEFILE_LIST))))',
+                        'Makefile')
+
+    def install(self, spec, prefix):
+        install_tree('bin', prefix.bin)
+        install_tree('lib', prefix.lib)