diff options
Diffstat (limited to 'var/spack/repos/builtin/packages/phist/package.py')
| -rw-r--r-- | var/spack/repos/builtin/packages/phist/package.py | 345 |
1 files changed, 180 insertions, 165 deletions
diff --git a/var/spack/repos/builtin/packages/phist/package.py b/var/spack/repos/builtin/packages/phist/package.py index 34c4ed0d33..84e676aecb 100644 --- a/var/spack/repos/builtin/packages/phist/package.py +++ b/var/spack/repos/builtin/packages/phist/package.py @@ -21,25 +21,25 @@ class Phist(CMakePackage): """ homepage = "https://bitbucket.org/essex/phist/" - url = "https://bitbucket.org/essex/phist/get/phist-1.9.6.tar.gz" - git = "https://bitbucket.org/essex/phist.git" + url = "https://bitbucket.org/essex/phist/get/phist-1.9.6.tar.gz" + git = "https://bitbucket.org/essex/phist.git" - maintainers = ['jthies'] - tags = ['e4s'] + maintainers = ["jthies"] + tags = ["e4s"] # phist is a required part of spack GitLab CI pipelines. In them, mpich is requested # to provide 'mpi' like this: spack install phist ^mpich %gcc@7.5.0 # Failure of this command to succeed breaks spack's gitlab CI pipelines! - version('develop', branch='devel') - version('master', branch='master') + version("develop", branch="devel") + version("master", branch="master") # phist-1.9.6 updated from the older "use mpi" to the newer "use mpi_f08" (MPI3.1): # The motivation was fixing it on Cray: https://github.com/spack/spack/issues/26002 # Documentation: https://www.mpi-forum.org/docs/mpi-3.1/mpi31-report/node408.htm # mpich does not provide mpi_f08.mod with gfortran-[789], it needs gfortran>=10: # https://stackoverflow.com/questions/65750862 - version('1.9.6', sha256='98ed5ccb22bb98d5b6bf9de0c9960105473e5244978853070b9a3c44138db662') + version("1.9.6", sha256="98ed5ccb22bb98d5b6bf9de0c9960105473e5244978853070b9a3c44138db662") # As spack GitLab CI pipelines use ^mpich %gcc@7.5.0, @1.9.6 with it can't be used: # A conflict would be possible, but when %gcc@10: or another compiler is available, @@ -54,202 +54,215 @@ class Phist(CMakePackage): # Instead, a check with a helpful error message is added to the build (see below). # and we use preferred=True to select 1.9.5 by default: version( - '1.9.5', - sha256='24faa3373003f185c82a658c510e36cba9acc4110eb60cbfded9de370ae9ea32', + "1.9.5", + sha256="24faa3373003f185c82a658c510e36cba9acc4110eb60cbfded9de370ae9ea32", preferred=True, ) - version('1.9.4', sha256='9dde3ca0480358fa0877ec8424aaee4011c5defc929219a5930388a7cdb4c8a6') - version('1.9.3', sha256='3ab7157e9f535a4c8537846cb11b516271ef13f82d0f8ebb7f96626fb9ab86cf') - version('1.9.2', sha256='289678fa7172708f5d32d6bd924c8fdfe72b413bba5bbb8ce6373c85c5ec5ae5') - version('1.9.1', sha256='6e6411115ec48afe605b4f2179e9bc45d60f15459428f474f3f32b80d2830f1f') - version('1.9.0', sha256='990d3308fc0083ed0f9f565d00c649ee70c3df74d44cbe5f19dfe05263d06559') - version('1.8.0', sha256='ee42946bce187e126452053b5f5c200b57b6e40ee3f5bcf0751f3ced585adeb0') - version('1.7.5', sha256='f11fe27f2aa13d69eb285cc0f32c33c1603fa1286b84e54c81856c6f2bdef500') - version('1.7.4', sha256='c5324f639b8c95b07cd29c3cd8dd7dd576c84a0b9228dbb88f8b87605424419e') - version('1.7.3', sha256='ab2d853c9ba13bcd3069fcc61c359cb412466a2e4b22ebbd2f5263cffa685126') - version('1.7.2', sha256='29b504d78b5efd57b87d2ca6e20bc8a32b1ba55b40f5a5b7189cc0d28e43bcc0') - version('1.6.1', sha256='4ed4869f24f920a494aeae0f7d1d94fe9efce55ebe0d298a5948c9603e07994d') - version('1.6.0', sha256='667a967b37d248242c275226c96efc447ef73a2b15f241c6a588d570d7fac07b') - version('1.4.3', sha256='9cc1c7ba7f7a04e94f4497da14199e4631a0d02d0e4187f3e16f4c242dc777c1') - - variant(name='kernel_lib', default='builtin', - description='select the kernel library (backend) for phist', - values=['builtin', - 'epetra', - 'tpetra', - 'petsc', - 'eigen', - 'ghost']) - - variant(name='int64', default=True, - description='Use 64-bit global indices.') - - variant(name='outlev', default='2', values=['0', '1', '2', '3', '4', '5'], - description='verbosity. 0: errors 1: +warnings 2: +info ' - '3: +verbose 4: +extreme 5: +debug') - - variant('host', default=True, - description='allow PHIST to use compiler flags that lead to host-' - 'specific code. Set this to False when cross-compiling.') - - variant('shared', default=True, - description='Enables the build of shared libraries') - - variant('mpi', default=True, - description='enable/disable MPI (note that the kernel library may ' - 'not support this choice)') - - variant('openmp', default=True, - description='enable/disable OpenMP') - - variant('parmetis', default=False, - description='enable/disable ParMETIS partitioning (only actually ' - 'used with kernel_lib=builtin)') - - variant('scamac', default=True, - description='enable/disable building the "SCAlable MAtrix ' - 'Collection" matrix generators.') - - variant('trilinos', default=False, - description='enable/disable Trilinos third-party libraries. ' - 'For all kernel_libs, we can use Belos and Anasazi ' - 'iterative solvers. For the Trilinos backends ' - '(kernel_lib=epetra|tpetra) we can use preconditioner ' - 'packages such as Ifpack, Ifpack2 and ML.') - - variant('fortran', default=True, - description='generate Fortran 2003 bindings (requires Python3 and ' - 'a Fortran compiler)') + version("1.9.4", sha256="9dde3ca0480358fa0877ec8424aaee4011c5defc929219a5930388a7cdb4c8a6") + version("1.9.3", sha256="3ab7157e9f535a4c8537846cb11b516271ef13f82d0f8ebb7f96626fb9ab86cf") + version("1.9.2", sha256="289678fa7172708f5d32d6bd924c8fdfe72b413bba5bbb8ce6373c85c5ec5ae5") + version("1.9.1", sha256="6e6411115ec48afe605b4f2179e9bc45d60f15459428f474f3f32b80d2830f1f") + version("1.9.0", sha256="990d3308fc0083ed0f9f565d00c649ee70c3df74d44cbe5f19dfe05263d06559") + version("1.8.0", sha256="ee42946bce187e126452053b5f5c200b57b6e40ee3f5bcf0751f3ced585adeb0") + version("1.7.5", sha256="f11fe27f2aa13d69eb285cc0f32c33c1603fa1286b84e54c81856c6f2bdef500") + version("1.7.4", sha256="c5324f639b8c95b07cd29c3cd8dd7dd576c84a0b9228dbb88f8b87605424419e") + version("1.7.3", sha256="ab2d853c9ba13bcd3069fcc61c359cb412466a2e4b22ebbd2f5263cffa685126") + version("1.7.2", sha256="29b504d78b5efd57b87d2ca6e20bc8a32b1ba55b40f5a5b7189cc0d28e43bcc0") + version("1.6.1", sha256="4ed4869f24f920a494aeae0f7d1d94fe9efce55ebe0d298a5948c9603e07994d") + version("1.6.0", sha256="667a967b37d248242c275226c96efc447ef73a2b15f241c6a588d570d7fac07b") + version("1.4.3", sha256="9cc1c7ba7f7a04e94f4497da14199e4631a0d02d0e4187f3e16f4c242dc777c1") + + variant( + name="kernel_lib", + default="builtin", + description="select the kernel library (backend) for phist", + values=["builtin", "epetra", "tpetra", "petsc", "eigen", "ghost"], + ) + + variant(name="int64", default=True, description="Use 64-bit global indices.") + + variant( + name="outlev", + default="2", + values=["0", "1", "2", "3", "4", "5"], + description="verbosity. 0: errors 1: +warnings 2: +info " + "3: +verbose 4: +extreme 5: +debug", + ) + + variant( + "host", + default=True, + description="allow PHIST to use compiler flags that lead to host-" + "specific code. Set this to False when cross-compiling.", + ) + + variant("shared", default=True, description="Enables the build of shared libraries") + + variant( + "mpi", + default=True, + description="enable/disable MPI (note that the kernel library may " + "not support this choice)", + ) + + variant("openmp", default=True, description="enable/disable OpenMP") + + variant( + "parmetis", + default=False, + description="enable/disable ParMETIS partitioning (only actually " + "used with kernel_lib=builtin)", + ) + + variant( + "scamac", + default=True, + description='enable/disable building the "SCAlable MAtrix ' + 'Collection" matrix generators.', + ) + + variant( + "trilinos", + default=False, + description="enable/disable Trilinos third-party libraries. " + "For all kernel_libs, we can use Belos and Anasazi " + "iterative solvers. For the Trilinos backends " + "(kernel_lib=epetra|tpetra) we can use preconditioner " + "packages such as Ifpack, Ifpack2 and ML.", + ) + + variant( + "fortran", + default=True, + description="generate Fortran 2003 bindings (requires Python3 and " "a Fortran compiler)", + ) # in older versions, it is not possible to completely turn off OpenMP - conflicts('~openmp', when='@:1.7.3') + conflicts("~openmp", when="@:1.7.3") # in older versions, it is not possible to turn off the use of host- # specific compiler flags in Release mode. - conflicts('~host', when='@:1.7.3') + conflicts("~host", when="@:1.7.3") # builtin always uses 64-bit indices - conflicts('~int64', when='kernel_lib=builtin') - conflicts('+int64', when='kernel_lib=eigen') + conflicts("~int64", when="kernel_lib=builtin") + conflicts("+int64", when="kernel_lib=eigen") # ###################### Patches ########################## # Only applies to 1.9.4: While SSE instructions are handled correctly, # build fails on ppc64le unless -DNO_WARN_X86_INTRINSICS is defined. - patch('ppc64_sse.patch', when='@1.9.4') - patch('update_tpetra_gotypes.patch', when='@1.6:1.8') - patch('sbang.patch', when='+fortran') + patch("ppc64_sse.patch", when="@1.9.4") + patch("update_tpetra_gotypes.patch", when="@1.6:1.8") + patch("sbang.patch", when="+fortran") # ###################### Dependencies ########################## - depends_on('cmake@3.8:', type='build') - depends_on('blas') - depends_on('lapack') + depends_on("cmake@3.8:", type="build") + depends_on("blas") + depends_on("lapack") # Python 3 or later is required for generating the Fortran 2003 bindings # since version 1.7, you can get rid of the dependency by switching off # the feature (e.g. use the '~fortran' variant) - depends_on('python@3:', when='@1.7: +fortran', type='build') - depends_on('mpi', when='+mpi') - depends_on('trilinos@12:+tpetra gotype=long_long', when='kernel_lib=tpetra +int64') - depends_on('trilinos@12:+tpetra gotype=int', when='kernel_lib=tpetra ~int64') + depends_on("python@3:", when="@1.7: +fortran", type="build") + depends_on("mpi", when="+mpi") + depends_on("trilinos@12:+tpetra gotype=long_long", when="kernel_lib=tpetra +int64") + depends_on("trilinos@12:+tpetra gotype=int", when="kernel_lib=tpetra ~int64") # Epetra backend also works with older Trilinos versions - depends_on('trilinos+epetra', when='kernel_lib=epetra') - depends_on('petsc +int64', when='kernel_lib=petsc +int64') - depends_on('petsc ~int64', when='kernel_lib=petsc ~int64') - depends_on('eigen', when='kernel_lib=eigen') - depends_on('ghost', when='kernel_lib=ghost') - - depends_on('trilinos+anasazi+belos', when='+trilinos') - depends_on('parmetis+int64', when='+parmetis+int64') - depends_on('parmetis~int64', when='+parmetis~int64') - depends_on('py-pytest', type='test') - depends_on('py-numpy', type='test', when='+mpi') + depends_on("trilinos+epetra", when="kernel_lib=epetra") + depends_on("petsc +int64", when="kernel_lib=petsc +int64") + depends_on("petsc ~int64", when="kernel_lib=petsc ~int64") + depends_on("eigen", when="kernel_lib=eigen") + depends_on("ghost", when="kernel_lib=ghost") + + depends_on("trilinos+anasazi+belos", when="+trilinos") + depends_on("parmetis+int64", when="+parmetis+int64") + depends_on("parmetis~int64", when="+parmetis~int64") + depends_on("py-pytest", type="test") + depends_on("py-numpy", type="test", when="+mpi") # The test_install compiles the examples and needs pkgconfig for it - depends_on('pkgconfig', type='test') + depends_on("pkgconfig", type="test") # Fortran 2003 bindings were included in version 1.7, previously they # required a separate package - conflicts('+fortran', when='@:1.6') + conflicts("+fortran", when="@:1.6") # older gcc's may produce incorrect SIMD code and fail # to compile some OpenMP statements - conflicts('%gcc@:4.9.1') + conflicts("%gcc@:4.9.1") # gcc@10: Error: Rank mismatch between actual argument at (1) # and actual argument at (2) (scalar and rank-1) - conflicts('%gcc@10:', when='@:1.9.0') + conflicts("%gcc@10:", when="@:1.9.0") # the phist repo came with it's own FindMPI.cmake before, which may cause some other # MPI installation to be used than the one spack wants. def patch(self): - if self.spec.satisfies('@1.9.6'): - filter_file('USE mpi', 'use mpi_f08', - 'src/kernels/builtin/crsmat_module.F90') + if self.spec.satisfies("@1.9.6"): + filter_file("USE mpi", "use mpi_f08", "src/kernels/builtin/crsmat_module.F90") # filter_file('use mpi', 'use mpi_f08', -> Needs more fixes # 'fortran_bindings/phist_testing.F90') # These are not needed for the build but as a reminder to be consistent: - filter_file('use mpi', 'use mpi_f08', - 'fortran_bindings/test/core.F90') - filter_file('use mpi', 'use mpi_f08', - 'fortran_bindings/test/jada.F90') - filter_file('use mpi', 'use mpi_f08', - 'fortran_bindings/test/kernels.F90') - - if '^mpich' in self.spec and self.spec.satisfies('%gcc@:9'): + filter_file("use mpi", "use mpi_f08", "fortran_bindings/test/core.F90") + filter_file("use mpi", "use mpi_f08", "fortran_bindings/test/jada.F90") + filter_file("use mpi", "use mpi_f08", "fortran_bindings/test/kernels.F90") + + if "^mpich" in self.spec and self.spec.satisfies("%gcc@:9"): raise InstallError("PR 26773: gcc<10 can't build phist>1.9.5 w/ ^mpich") - if self.spec.satisfies('@:1.9.5'): + if self.spec.satisfies("@:1.9.5"): # Tag '1.9.5' has moved to an older commit later without fixing the version: - filter_file('VERSION_PATCH 4', 'VERSION_PATCH 5', 'CMakeLists.txt') - force_remove('cmake/FindMPI.cmake') + filter_file("VERSION_PATCH 4", "VERSION_PATCH 5", "CMakeLists.txt") + force_remove("cmake/FindMPI.cmake") # mpiexec -n12 puts a lot of stress on a pod and gets stuck in a loop very often - test = FileFilter('CMakeLists.txt') - test.filter('1 2 3 12', '1 2 3') - test.filter('12/', '6/') - test.filter('TEST_DRIVERS_NUM_THREADS 6', 'TEST_DRIVERS_NUM_THREADS 3') + test = FileFilter("CMakeLists.txt") + test.filter("1 2 3 12", "1 2 3") + test.filter("12/", "6/") + test.filter("TEST_DRIVERS_NUM_THREADS 6", "TEST_DRIVERS_NUM_THREADS 3") def setup_build_environment(self, env): - env.set('SPACK_SBANG', sbang.sbang_install_path()) + env.set("SPACK_SBANG", sbang.sbang_install_path()) def cmake_args(self): spec = self.spec define = CMakePackage.define - if spec.satisfies('kernel_lib=builtin') and spec.satisfies('~mpi'): - raise InstallError('~mpi not possible with kernel_lib=builtin!') - - kernel_lib = spec.variants['kernel_lib'].value - outlev = spec.variants['outlev'].value - - lapacke_libs = (spec['lapack:c'].libs + spec['blas:c'].libs + - find_system_libraries(['libm'])).joined(';') - lapacke_include_dir = spec['lapack:c'].headers.directories[0] - - args = ['-DPHIST_USE_CCACHE=OFF', - '-DPHIST_KERNEL_LIB=%s' % kernel_lib, - '-DPHIST_OUTLEV=%s' % outlev, - '-DTPL_LAPACKE_LIBRARIES=%s' % lapacke_libs, - '-DTPL_LAPACKE_INCLUDE_DIRS=%s' % lapacke_include_dir, - self.define_from_variant('PHIST_ENABLE_MPI', 'mpi'), - self.define_from_variant('PHIST_ENABLE_OPENMP', 'openmp'), - self.define_from_variant('BUILD_SHARED_LIBS', 'shared'), - self.define_from_variant('PHIST_ENABLE_SCAMAC', 'scamac'), - '-DPHIST_USE_TRILINOS_TPLS:BOOL=%s' - % ('ON' if '^trilinos' in spec else 'OFF'), - '-DPHIST_USE_SOLVER_TPLS:BOOL=%s' - % ('ON' if '^trilinos+belos+anasazi' in spec else 'OFF'), - '-DPHIST_USE_PRECON_TPLS:BOOL=%s' - % ('ON' if '^trilinos' in spec else 'OFF'), - self.define_from_variant('XSDK_ENABLE_Fortran', 'fortran'), - '-DXSDK_INDEX_SIZE=%s' - % ('64' if '+int64' in spec else '32'), - self.define_from_variant('PHIST_HOST_OPTIMIZE', 'host'), - ] + if spec.satisfies("kernel_lib=builtin") and spec.satisfies("~mpi"): + raise InstallError("~mpi not possible with kernel_lib=builtin!") + + kernel_lib = spec.variants["kernel_lib"].value + outlev = spec.variants["outlev"].value + + lapacke_libs = ( + spec["lapack:c"].libs + spec["blas:c"].libs + find_system_libraries(["libm"]) + ).joined(";") + lapacke_include_dir = spec["lapack:c"].headers.directories[0] + + args = [ + "-DPHIST_USE_CCACHE=OFF", + "-DPHIST_KERNEL_LIB=%s" % kernel_lib, + "-DPHIST_OUTLEV=%s" % outlev, + "-DTPL_LAPACKE_LIBRARIES=%s" % lapacke_libs, + "-DTPL_LAPACKE_INCLUDE_DIRS=%s" % lapacke_include_dir, + self.define_from_variant("PHIST_ENABLE_MPI", "mpi"), + self.define_from_variant("PHIST_ENABLE_OPENMP", "openmp"), + self.define_from_variant("BUILD_SHARED_LIBS", "shared"), + self.define_from_variant("PHIST_ENABLE_SCAMAC", "scamac"), + "-DPHIST_USE_TRILINOS_TPLS:BOOL=%s" % ("ON" if "^trilinos" in spec else "OFF"), + "-DPHIST_USE_SOLVER_TPLS:BOOL=%s" + % ("ON" if "^trilinos+belos+anasazi" in spec else "OFF"), + "-DPHIST_USE_PRECON_TPLS:BOOL=%s" % ("ON" if "^trilinos" in spec else "OFF"), + self.define_from_variant("XSDK_ENABLE_Fortran", "fortran"), + "-DXSDK_INDEX_SIZE=%s" % ("64" if "+int64" in spec else "32"), + self.define_from_variant("PHIST_HOST_OPTIMIZE", "host"), + ] # Force phist to use the MPI wrappers instead of raw compilers # (see issue #26002 and the comment in the trilinos package.py) - if '+mpi' in spec: + if "+mpi" in spec: args.extend( - [define('CMAKE_C_COMPILER', spec['mpi'].mpicc), - define('CMAKE_CXX_COMPILER', spec['mpi'].mpicxx), - define('CMAKE_Fortran_COMPILER', spec['mpi'].mpifc), - define('MPI_HOME', spec['mpi'].prefix), - ]) + [ + define("CMAKE_C_COMPILER", spec["mpi"].mpicc), + define("CMAKE_CXX_COMPILER", spec["mpi"].mpicxx), + define("CMAKE_Fortran_COMPILER", spec["mpi"].mpifc), + define("MPI_HOME", spec["mpi"].prefix), + ] + ) # Workaround for non-compliant and possibly broken code needed for gcc@10: # MPI_Allreduce(localRes, res, 1, MPI_LOGICAL, MPI_LAND, map1%comm, ierr); @@ -257,33 +270,35 @@ class Phist(CMakePackage): # Error: Type mismatch between actual argument at (1) # and actual argument at (2) (LOGICAL(4)/INTEGER(4)). - if spec.satisfies('%gcc@10:'): - args.append(define('CMAKE_Fortran_FLAGS', '-fallow-argument-mismatch')) + if spec.satisfies("%gcc@10:"): + args.append(define("CMAKE_Fortran_FLAGS", "-fallow-argument-mismatch")) return args def check(self): with working_dir(self.build_directory): # This affects all versions of phist with ^mpich with all gcc versions: - if '^mpich' in self.spec: - hint = 'Expect tests to timeout with mpich. Should work with: ^openmpi.' - tty.warn('========================== %s =======================' % hint) + if "^mpich" in self.spec: + hint = "Expect tests to timeout with mpich. Should work with: ^openmpi." + tty.warn("========================== %s =======================" % hint) try: make("check") except spack.util.executable.ProcessError: - raise InstallError('run-test of phist ^mpich: Hint: ' + hint) + raise InstallError("run-test of phist ^mpich: Hint: " + hint) else: make("check") - @run_after('install') + @run_after("install") @on_package_attributes(run_tests=True) def test_install(self): # The build script of test_install expects the sources to be copied here: - install_tree(join_path(self.stage.source_path, 'exampleProjects'), - join_path(self.stage.path, 'exampleProjects')) + install_tree( + join_path(self.stage.source_path, "exampleProjects"), + join_path(self.stage.path, "exampleProjects"), + ) with working_dir(self.build_directory): make("test_install") @property def parallel(self): - return self.spec.satisfies('@1.8:') + return self.spec.satisfies("@1.8:") |