diff options
Diffstat (limited to 'var/spack/repos/builtin/packages/pindel/package.py')
| -rw-r--r-- | var/spack/repos/builtin/packages/pindel/package.py | 28 |
1 files changed, 10 insertions, 18 deletions
diff --git a/var/spack/repos/builtin/packages/pindel/package.py b/var/spack/repos/builtin/packages/pindel/package.py index 8ad0bffee7..38d8cfa193 100644 --- a/var/spack/repos/builtin/packages/pindel/package.py +++ b/var/spack/repos/builtin/packages/pindel/package.py @@ -21,26 +21,18 @@ class Pindel(MakefilePackage): version('0.2.5', sha256='9908940d090eff23d940c3b6f2f6b3fc2bb1fd3b7a2d553cc81eed240a23fd9f') depends_on('htslib@1.7:') - # - # This Makefile2 stuff is due to the original installer, - # The author wants to run make twice, the first - # time generates a Makefile.local then returns "false" - # User is then suppose to run make again and the - # package will compile. This is an attempt to - # stay as close to the original installer as possible - # + + # GCC > 4.8 seems to dislike calling abs on an unsigned integer + # replace ambiguous calls to abs() on the difference between two + # unsigned ints with a one line funtion that returns the 'absolute + # value' of the difference between two unsigned ints. + patch('gcc-5-compat.patch', when='@0.2.5b8%gcc@5:') + + build_directory = 'src' def edit(self, spec, prefix): - copy('Makefile', 'Makefile2') - myedit = FileFilter('Makefile2') - myedit.filter('-include Makefile.local', '#removed include') - myedit.filter('@false', '#removed autofailure') - - def build(self, spec, prefix): - make("Makefile.local", "-f", - "Makefile2", - "HTSLIB=%s" % spec['htslib'].prefix) - make("HTSLIB=%s" % spec['htslib'].prefix) + filter_file('include ../Makefile.local', '', 'src/Makefile') + filter_file('Makefile.local', '', 'src/Makefile') def install(self, spec, prefix): mkdirp(prefix.bin) |