diff options
Diffstat (limited to 'var/spack/repos/builtin/packages/plink-ng/package.py')
| -rw-r--r-- | var/spack/repos/builtin/packages/plink-ng/package.py | 31 |
1 files changed, 15 insertions, 16 deletions
diff --git a/var/spack/repos/builtin/packages/plink-ng/package.py b/var/spack/repos/builtin/packages/plink-ng/package.py index 412253a588..dc0dbf58d7 100644 --- a/var/spack/repos/builtin/packages/plink-ng/package.py +++ b/var/spack/repos/builtin/packages/plink-ng/package.py @@ -10,29 +10,28 @@ class PlinkNg(Package): """A comprehensive update to the PLINK association analysis toolset.""" homepage = "https://www.cog-genomics.org/plink/2.0/" - url = "https://www.cog-genomics.org/static/bin/plink2_src_200511.zip" + url = "https://www.cog-genomics.org/static/bin/plink2_src_200511.zip" - version('200511', sha256='00cff19bece88acb7a21ba098501cb677b78d22c9f3ca5bcdc869139a40db816') + version("200511", sha256="00cff19bece88acb7a21ba098501cb677b78d22c9f3ca5bcdc869139a40db816") - depends_on('zlib') - depends_on('zstd@1.4.4:') - depends_on('cblas') - depends_on('blas') - depends_on('lapack') + depends_on("zlib") + depends_on("zstd@1.4.4:") + depends_on("cblas") + depends_on("blas") + depends_on("lapack") - conflicts('%gcc@:4') + conflicts("%gcc@:4") def url_for_version(self, ver): - template = 'https://www.cog-genomics.org/static/bin/plink2_src_{0}.zip' + template = "https://www.cog-genomics.org/static/bin/plink2_src_{0}.zip" return template.format(ver) def setup_build_environment(self, env): - zlib = join_path(self.spec['zlib'].prefix.lib, 'libz.a') - env.set('ZLIB', zlib) + zlib = join_path(self.spec["zlib"].prefix.lib, "libz.a") + env.set("ZLIB", zlib) def install(self, spec, prefix): - ld_flags = [spec['lapack'].libs.ld_flags, spec['blas'].libs.ld_flags] - filter_file('-llapack -lcblas -lblas', ' '.join(ld_flags), - 'build.sh', string=True) - which('sh')('build.sh') - install_tree('.', prefix) + ld_flags = [spec["lapack"].libs.ld_flags, spec["blas"].libs.ld_flags] + filter_file("-llapack -lcblas -lblas", " ".join(ld_flags), "build.sh", string=True) + which("sh")("build.sh") + install_tree(".", prefix) |