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Diffstat (limited to 'var/spack/repos/builtin/packages/pplacer/package.py')
| -rw-r--r-- | var/spack/repos/builtin/packages/pplacer/package.py | 27 |
1 files changed, 27 insertions, 0 deletions
diff --git a/var/spack/repos/builtin/packages/pplacer/package.py b/var/spack/repos/builtin/packages/pplacer/package.py new file mode 100644 index 0000000000..bfcd2f2d7f --- /dev/null +++ b/var/spack/repos/builtin/packages/pplacer/package.py @@ -0,0 +1,27 @@ +# Copyright 2013-2018 Lawrence Livermore National Security, LLC and other +# Spack Project Developers. See the top-level COPYRIGHT file for details. +# +# SPDX-License-Identifier: (Apache-2.0 OR MIT) + +from spack import * + + +class Pplacer(Package): + """Pplacer places query sequences on a fixed reference phylogenetic tree + to maximize phylogenetic likelihood or posterior probability according + to a reference alignment. Pplacer is designed to be fast, to give + useful information about uncertainty, and to offer advanced + visualization and downstream analysis. + """ + + homepage = "http://matsen.fhcrc.org/pplacer/" + url = "https://github.com/matsen/pplacer/releases/download/v1.1.alpha19/pplacer-linux-v1.1.alpha19.zip" + + version('1.1.alpha19', 'e6b78604882d41d4bf13592c7edebfa2') + + def install(self, spec, prefix): + install_tree('scripts', prefix.bin) + force_remove(join_path(prefix.bin, 'setup.py')) + install('guppy', prefix.bin) + install('pplacer', prefix.bin) + install('rppr', prefix.bin) |