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Diffstat (limited to 'var/spack/repos/builtin/packages/prinseq-lite/package.py')
| -rw-r--r-- | var/spack/repos/builtin/packages/prinseq-lite/package.py | 41 |
1 files changed, 41 insertions, 0 deletions
diff --git a/var/spack/repos/builtin/packages/prinseq-lite/package.py b/var/spack/repos/builtin/packages/prinseq-lite/package.py new file mode 100644 index 0000000000..764a390343 --- /dev/null +++ b/var/spack/repos/builtin/packages/prinseq-lite/package.py @@ -0,0 +1,41 @@ +# Copyright 2013-2018 Lawrence Livermore National Security, LLC and other +# Spack Project Developers. See the top-level COPYRIGHT file for details. +# +# SPDX-License-Identifier: (Apache-2.0 OR MIT) + +from spack import * + + +class PrinseqLite(Package): + """PRINSEQ will help you to preprocess your genomic or metagenomic + sequence data in FASTA or FASTQ format.""" + + homepage = "http://prinseq.sourceforge.net" + url = "https://sourceforge.net/projects/prinseq/files/standalone/prinseq-lite-0.20.4.tar.gz" + + version('0.20.4', '3be1a572073ebbbecfeba42a42853ff5') + + variant('nopca', default=True, description="Graphs version without PCA") + + depends_on('perl', type='run') + depends_on('perl-cairo', type='run') + depends_on('perl-digest-md5', type='run') + depends_on('perl-json', type='run') + + def install(self, spec, prefix): + mkdirp(prefix.bin) + + filter_file(r'#!/usr/bin/perl', + '#!/usr/bin/env perl', + 'prinseq-graphs-noPCA.pl') + + filter_file(r'#!/usr/bin/perl', + '#!/usr/bin/env perl', + 'prinseq-lite.pl') + + install('prinseq-graphs-noPCA.pl', prefix.bin) + install('prinseq-lite.pl', prefix.bin) + + chmod = which('chmod') + chmod('+x', join_path(self.prefix.bin, 'prinseq-graphs-noPCA.pl')) + chmod('+x', join_path(self.prefix.bin, 'prinseq-lite.pl')) |