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Diffstat (limited to 'var/spack/repos/builtin/packages/py-breakseq2/package.py')
| -rw-r--r-- | var/spack/repos/builtin/packages/py-breakseq2/package.py | 22 |
1 files changed, 22 insertions, 0 deletions
diff --git a/var/spack/repos/builtin/packages/py-breakseq2/package.py b/var/spack/repos/builtin/packages/py-breakseq2/package.py new file mode 100644 index 0000000000..91d519e795 --- /dev/null +++ b/var/spack/repos/builtin/packages/py-breakseq2/package.py @@ -0,0 +1,22 @@ +# Copyright 2013-2018 Lawrence Livermore National Security, LLC and other +# Spack Project Developers. See the top-level COPYRIGHT file for details. +# +# SPDX-License-Identifier: (Apache-2.0 OR MIT) + +from spack import * + + +class PyBreakseq2(PythonPackage): + """nucleotide-resolution analysis of structural variants""" + + homepage = "http://bioinform.github.io/breakseq2/" + url = "https://github.com/bioinform/breakseq2/archive/2.2.tar.gz" + + version('2.2', '6fd5a103c2781717b0b1d0efcbdc17e7') + + depends_on('py-setuptools', type='build') + depends_on('py-biopython@1.65', type=('build', 'run')) + depends_on('py-cython', type='build') + depends_on('py-pysam@0.7.7', type=('build', 'run')) + depends_on('bwa', type='run') + depends_on('samtools', type='run') |