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Diffstat (limited to 'var/spack/repos/builtin/packages/py-checkm-genome/package.py')
| -rw-r--r-- | var/spack/repos/builtin/packages/py-checkm-genome/package.py | 24 |
1 files changed, 24 insertions, 0 deletions
diff --git a/var/spack/repos/builtin/packages/py-checkm-genome/package.py b/var/spack/repos/builtin/packages/py-checkm-genome/package.py new file mode 100644 index 0000000000..fa4fe7c3f0 --- /dev/null +++ b/var/spack/repos/builtin/packages/py-checkm-genome/package.py @@ -0,0 +1,24 @@ +# Copyright 2013-2018 Lawrence Livermore National Security, LLC and other +# Spack Project Developers. See the top-level COPYRIGHT file for details. +# +# SPDX-License-Identifier: (Apache-2.0 OR MIT) + +from spack import * + + +class PyCheckmGenome(PythonPackage): + """Assess the quality of microbial genomes recovered from isolates, single + cells, and metagenomes""" + + homepage = "https://ecogenomics.github.io/CheckM" + url = "https://pypi.io/packages/source/c/checkm-genome/checkm-genome-1.0.11.tar.gz" + + version('1.0.11', '3058546ec324e2420cf72f0d2576114b') + + depends_on('hmmer@3.1b1:') + depends_on('prodigal@2.6.1:') + depends_on('py-numpy@1.8.0:', type=('build', 'run')) + depends_on('py-scipy@0.9.0:', type=('build', 'run')) + depends_on('py-matplotlib@1.3.1:', type=('build', 'run')) + depends_on('py-pysam@0.8.3:', type=('build', 'run')) + depends_on('py-dendropy@4.0.0:', type=('build', 'run')) |