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Diffstat (limited to 'var/spack/repos/builtin/packages/py-cnvkit/package.py')
| -rw-r--r-- | var/spack/repos/builtin/packages/py-cnvkit/package.py | 48 |
1 files changed, 0 insertions, 48 deletions
diff --git a/var/spack/repos/builtin/packages/py-cnvkit/package.py b/var/spack/repos/builtin/packages/py-cnvkit/package.py deleted file mode 100644 index 045c940206..0000000000 --- a/var/spack/repos/builtin/packages/py-cnvkit/package.py +++ /dev/null @@ -1,48 +0,0 @@ -############################################################################## -# Copyright (c) 2013-2018, Lawrence Livermore National Security, LLC. -# Produced at the Lawrence Livermore National Laboratory. -# -# This file is part of Spack. -# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved. -# LLNL-CODE-647188 -# -# For details, see https://github.com/spack/spack -# Please also see the NOTICE and LICENSE files for our notice and the LGPL. -# -# This program is free software; you can redistribute it and/or modify -# it under the terms of the GNU Lesser General Public License (as -# published by the Free Software Foundation) version 2.1, February 1999. -# -# This program is distributed in the hope that it will be useful, but -# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF -# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and -# conditions of the GNU Lesser General Public License for more details. -# -# You should have received a copy of the GNU Lesser General Public -# License along with this program; if not, write to the Free Software -# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA -############################################################################## -from spack import * - - -class PyCnvkit(PythonPackage): - """A command-line toolkit and Python library for detecting copy number - variants and alterations genome-wide from high-throughput sequencing.""" - - homepage = "http://cnvkit.readthedocs.io/en/stable/" - url = "https://github.com/etal/cnvkit/archive/v0.9.2.tar.gz" - - version('0.9.2', '16612c4dcc9570f6ef9fecc42caf1745') - - depends_on('py-setuptools', type='build') - depends_on('py-biopython@1.62:', type=('build', 'run')) - depends_on('py-future@0.15.2:', type=('build', 'run')) - depends_on('py-matplotlib@1.3.1:', type=('build', 'run')) - depends_on('py-numpy@1.9:', type=('build', 'run')) - depends_on('py-pandas@0.18.1:', type=('build', 'run')) - depends_on('py-pyfaidx@0.4.7:', type=('build', 'run')) - depends_on('py-pysam@0.10.0:0.13', type=('build', 'run')) - depends_on('py-reportlab@3.0:', type=('build', 'run')) - depends_on('py-scipy@0.15.0:', type=('build', 'run')) - depends_on('bcftools@1.6', type=('build', 'run')) - depends_on('samtools@1.6', type=('build', 'run')) |