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Diffstat (limited to 'var/spack/repos/builtin/packages/py-getorganelle/package.py')
| -rw-r--r-- | var/spack/repos/builtin/packages/py-getorganelle/package.py | 38 |
1 files changed, 0 insertions, 38 deletions
diff --git a/var/spack/repos/builtin/packages/py-getorganelle/package.py b/var/spack/repos/builtin/packages/py-getorganelle/package.py deleted file mode 100644 index aebb767706..0000000000 --- a/var/spack/repos/builtin/packages/py-getorganelle/package.py +++ /dev/null @@ -1,38 +0,0 @@ -# Copyright 2013-2023 Lawrence Livermore National Security, LLC and other -# Spack Project Developers. See the top-level COPYRIGHT file for details. -# -# SPDX-License-Identifier: (Apache-2.0 OR MIT) - -from spack.package import * - - -class PyGetorganelle(PythonPackage): - """Organelle Genome Assembly Toolkit (Chloroplast/Mitocondrial/ITS)""" - - homepage = "https://github.com/Kinggerm/GetOrganelle" - url = "https://github.com/Kinggerm/GetOrganelle/archive/refs/tags/1.7.5.0.tar.gz" - - maintainers("dorton21") - - # renamed to getorganelle - version( - "1.7.5.0", - sha256="c498196737726cb4c0158f23037bf301a069f5028ece729bb4d09c7d915df93d", - deprecated=True, - ) - - depends_on("py-setuptools", type="build") - depends_on("py-numpy@1.16.4:", type=("build", "run")) - depends_on("py-scipy@1.3.0:", type=("build", "run")) - depends_on("py-sympy@1.4:", type=("build", "run")) - depends_on("py-requests", type=("build", "run")) - - depends_on("bowtie2", type="run") - depends_on("spades", type="run") - depends_on("blast-plus", type="run") - - # Allow access to relevant runtime scripts - # I.e. get_organelle_config.py, get_organelle_from_reads.py, etc. - def setup_run_environment(self, env): - env.prepend_path("PATH", prefix) - env.prepend_path("PATH", prefix.Utilities) |