diff options
Diffstat (limited to 'var/spack/repos/builtin/packages/py-haphpipe/package.py')
| -rw-r--r-- | var/spack/repos/builtin/packages/py-haphpipe/package.py | 58 |
1 files changed, 29 insertions, 29 deletions
diff --git a/var/spack/repos/builtin/packages/py-haphpipe/package.py b/var/spack/repos/builtin/packages/py-haphpipe/package.py index 749f3b1798..bf741e301d 100644 --- a/var/spack/repos/builtin/packages/py-haphpipe/package.py +++ b/var/spack/repos/builtin/packages/py-haphpipe/package.py @@ -11,39 +11,39 @@ class PyHaphpipe(PythonPackage): population genetics, and phylodynamics.""" homepage = "https://github.com/gwcbi/haphpipe" - url = "https://github.com/gwcbi/haphpipe/archive/v1.0.3.tar.gz" + url = "https://github.com/gwcbi/haphpipe/archive/v1.0.3.tar.gz" - maintainers = ['dorton21'] + maintainers = ["dorton21"] - version('1.0.3', sha256='9a9e8632a217ff4207c1dea66887a471e0ea04bbb7c0f0d72631acaba214bd37') + version("1.0.3", sha256="9a9e8632a217ff4207c1dea66887a471e0ea04bbb7c0f0d72631acaba214bd37") # Deps. taken from # https://github.com/bioconda/bioconda-recipes/blob/master/recipes/haphpipe/meta.yaml # https://bioconda.github.io/recipes/haphpipe/README.html # https://github.com/gwcbi/haphpipe/blob/master/environment.yml - depends_on('python@3.7:', type=('build', 'run')) - depends_on('py-future', type=('build', 'run')) - depends_on('py-pyyaml', type=('build', 'run')) - depends_on('py-biopython@1.73:', type=('build', 'run')) - depends_on('py-gsutil', type=('build', 'run')) - depends_on('py-sierrapy', type=('build', 'run')) - depends_on('py-setuptools', type='build') - - depends_on('bowtie2', type=('build', 'run')) - depends_on('blast-plus', type=('build', 'run')) - depends_on('freebayes', type=('build', 'run')) - depends_on('modeltest-ng', type=('build', 'run')) - depends_on('libdeflate', type=('build', 'run')) - depends_on('sratoolkit', type=('build', 'run')) - depends_on('spades', type=('build', 'run')) - depends_on('seqtk', type=('build', 'run')) - depends_on('raxml-ng~mpi', type=('build', 'run')) - depends_on('gatk@3.8-0', type=('build', 'run')) - depends_on('trinity', type=('build', 'run')) - depends_on('trimmomatic@0.38:', type=('build', 'run')) - depends_on('flash@1.2.11:', type=('build', 'run')) - depends_on('mummer@3.23:', type=('build', 'run')) - depends_on('bwa', type=('build', 'run')) - depends_on('samtools@1.9:', type=('build', 'run')) - depends_on('mafft', type=('build', 'run')) - depends_on('picard', type=('build', 'run')) + depends_on("python@3.7:", type=("build", "run")) + depends_on("py-future", type=("build", "run")) + depends_on("py-pyyaml", type=("build", "run")) + depends_on("py-biopython@1.73:", type=("build", "run")) + depends_on("py-gsutil", type=("build", "run")) + depends_on("py-sierrapy", type=("build", "run")) + depends_on("py-setuptools", type="build") + + depends_on("bowtie2", type=("build", "run")) + depends_on("blast-plus", type=("build", "run")) + depends_on("freebayes", type=("build", "run")) + depends_on("modeltest-ng", type=("build", "run")) + depends_on("libdeflate", type=("build", "run")) + depends_on("sratoolkit", type=("build", "run")) + depends_on("spades", type=("build", "run")) + depends_on("seqtk", type=("build", "run")) + depends_on("raxml-ng~mpi", type=("build", "run")) + depends_on("gatk@3.8-0", type=("build", "run")) + depends_on("trinity", type=("build", "run")) + depends_on("trimmomatic@0.38:", type=("build", "run")) + depends_on("flash@1.2.11:", type=("build", "run")) + depends_on("mummer@3.23:", type=("build", "run")) + depends_on("bwa", type=("build", "run")) + depends_on("samtools@1.9:", type=("build", "run")) + depends_on("mafft", type=("build", "run")) + depends_on("picard", type=("build", "run")) |