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Diffstat (limited to 'var/spack/repos/builtin/packages/py-metaphlan/package.py')
-rw-r--r-- | var/spack/repos/builtin/packages/py-metaphlan/package.py | 40 |
1 files changed, 40 insertions, 0 deletions
diff --git a/var/spack/repos/builtin/packages/py-metaphlan/package.py b/var/spack/repos/builtin/packages/py-metaphlan/package.py new file mode 100644 index 0000000000..5fcadcc527 --- /dev/null +++ b/var/spack/repos/builtin/packages/py-metaphlan/package.py @@ -0,0 +1,40 @@ +# Copyright 2013-2022 Lawrence Livermore National Security, LLC and other +# Spack Project Developers. See the top-level COPYRIGHT file for details. +# +# SPDX-License-Identifier: (Apache-2.0 OR MIT) + + +from spack.package import * + + +class PyMetaphlan(PythonPackage): + """MetaPhlAn is a computational tool for profiling the composition of + microbial communities (Bacteria, Archaea and Eukaryotes) from metagenomic + shotgun sequencing data (i.e. not 16S) with species-level.""" + + homepage = "https://github.com/biobakery/MetaPhlAn/" + pypi = "MetaPhlAn/MetaPhlAn-4.0.2.tar.gz" + + version("4.0.2", sha256="2549fdf2de97a0024551a7bb8d639613b8a7b612054506c88cdb719353f466ff") + version("3.1.0", sha256="4e7a7a36d07ed6f4f945afc4216db7f691d44a22b059c2404c917a160a687a6b") + + depends_on("python@3.7:", type=("build", "run")) + depends_on("py-setuptools", type="build") + depends_on("py-numpy", type=("build", "run")) + depends_on("py-h5py", type=("build", "run")) + depends_on("py-biom-format", type=("build", "run")) + depends_on("py-biopython", type=("build", "run")) + depends_on("py-pandas", type=("build", "run")) + depends_on("py-scipy", type=("build", "run")) + depends_on("py-hclust2", type=("build", "run"), when="@4.0.2:") + depends_on("py-requests", type=("build", "run")) + depends_on("py-dendropy", type=("build", "run")) + depends_on("py-pysam", type=("build", "run")) + depends_on("py-cmseq", type=("build", "run")) + depends_on("py-phylophlan", type=("build", "run")) + depends_on("py-matplotlib", type=("build", "run")) + depends_on("bowtie2@2.3:", type=("build", "run")) + depends_on("muscle@3.8.1551:", type=("build", "run")) + depends_on("blast-plus@2.6:", type=("build", "run")) + depends_on("raxml@8.2.10:", type=("build", "run")) + depends_on("samtools@1.9:", type=("build", "run")) |