diff options
Diffstat (limited to 'var/spack/repos/builtin/packages/py-numpy/package.py')
| -rw-r--r-- | var/spack/repos/builtin/packages/py-numpy/package.py | 503 |
1 files changed, 249 insertions, 254 deletions
diff --git a/var/spack/repos/builtin/packages/py-numpy/package.py b/var/spack/repos/builtin/packages/py-numpy/package.py index dbaed870d6..76210b1573 100644 --- a/var/spack/repos/builtin/packages/py-numpy/package.py +++ b/var/spack/repos/builtin/packages/py-numpy/package.py @@ -18,233 +18,237 @@ class PyNumpy(PythonPackage): homepage = "https://numpy.org/" pypi = "numpy/numpy-1.23.0.tar.gz" - git = "https://github.com/numpy/numpy.git" - - maintainers = ['adamjstewart', 'rgommers'] - - version('main', branch='main') - version('1.23.1', sha256='d748ef349bfef2e1194b59da37ed5a29c19ea8d7e6342019921ba2ba4fd8b624') - version('1.23.0', sha256='bd3fa4fe2e38533d5336e1272fc4e765cabbbde144309ccee8675509d5cd7b05') - version('1.22.4', sha256='425b390e4619f58d8526b3dcf656dde069133ae5c240229821f01b5f44ea07af') - version('1.22.3', sha256='dbc7601a3b7472d559dc7b933b18b4b66f9aa7452c120e87dfb33d02008c8a18') - version('1.22.2', sha256='076aee5a3763d41da6bef9565fdf3cb987606f567cd8b104aded2b38b7b47abf') - 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sha256="36ee86d5adbabc4fa2643a073f93d5504bdfed37a149a3a49f4dde259f35a750") + version("1.13.1", sha256="c9b0283776085cb2804efff73e9955ca279ba4edafd58d3ead70b61d209c4fbb") + version("1.13.0", sha256="dcff367b725586830ff0e20b805c7654c876c2d4585c0834a6049502b9d6cf7e") + version("1.12.1", sha256="a65266a4ad6ec8936a1bc85ce51f8600634a31a258b722c9274a80ff189d9542") + version("1.12.0", sha256="ff320ecfe41c6581c8981dce892fe6d7e69806459a899e294e4bf8229737b154") + version("1.11.3", sha256="2e0fc5248246a64628656fe14fcab0a959741a2820e003bd15538226501b82f7") + version("1.11.2", sha256="c1ed4d1d2a795409c7df1eb4bfee65c0e3326cfc7c57875fa39e5c7414116d9a") + version("1.11.1", sha256="4e9c289b9d764d10353a224a5286dda3e0425b13b112719bdc3e9864ae648d79") + version("1.11.0", sha256="9109f260850627e4b83a3c4bcef4f2f99357eb4a5eaae75dec51c32f3c197aa3") + version("1.10.4", sha256="8ce443dc79656a9fc97a7837f1444d324aef2c9b53f31f83441f57ad1f1f3659") + version("1.9.3", sha256="baa074bb1c7f9c822122fb81459b7caa5fc49267ca94cca69465c8dcfd63ac79") + version("1.9.2", sha256="e37805754f4ebb575c434d134f6bebb8b857d9843c393f6943c7be71ef57311c") + version("1.9.1", sha256="2a545c0d096d86035b12160fcba5e4c0a08dcabbf902b4f867eb64deb31a2b7a") + + variant("blas", default=True, description="Build with BLAS support") + variant("lapack", default=True, description="Build with LAPACK support") + + depends_on("python@2.7:2.8,3.4:3.6", type=("build", "link", "run"), when="@:1.13") + depends_on("python@2.7:2.8,3.4:3.8", type=("build", "link", "run"), when="@1.14:1.15") + depends_on("python@2.7:2.8,3.5:3.9", type=("build", "link", "run"), when="@1.16") + depends_on("python@3.5:3.9", type=("build", "link", "run"), when="@1.17:1.18") + depends_on("python@3.6:3.10", type=("build", "link", "run"), when="@1.19") + depends_on("python@3.7:3.10", type=("build", "link", "run"), when="@1.20:1.21") + depends_on("python@3.8:", type=("build", "link", "run"), when="@1.22:") + depends_on("py-setuptools", type=("build", "run")) + depends_on("py-setuptools@:59", when="@:1.22.1", type=("build", "run")) # Check pyproject.toml for updates to the required cython version - depends_on('py-cython@0.29.13:2', when='@1.18.0:', type='build') - depends_on('py-cython@0.29.14:2', when='@1.18.1:', type='build') - depends_on('py-cython@0.29.21:2', when='@1.19.1:', type='build') - depends_on('py-cython@0.29.24:2', when='@1.21.2:', type='build') - depends_on('py-cython@0.29.30:2', when='@1.22.4:', type='build') - depends_on('blas', when='+blas') - depends_on('lapack', when='+lapack') - - depends_on('py-nose@1.0.0:', when='@:1.14', type='test') - depends_on('py-pytest', when='@1.15:', type='test') - depends_on('py-hypothesis', when='@1.19:', type='test') - depends_on('py-typing-extensions@4.2:', when='@1.23:', type='test') + depends_on("py-cython@0.29.13:2", when="@1.18.0:", type="build") + depends_on("py-cython@0.29.14:2", when="@1.18.1:", type="build") + depends_on("py-cython@0.29.21:2", when="@1.19.1:", type="build") + depends_on("py-cython@0.29.24:2", when="@1.21.2:", type="build") + depends_on("py-cython@0.29.30:2", when="@1.22.4:", type="build") + depends_on("blas", when="+blas") + depends_on("lapack", when="+lapack") + + depends_on("py-nose@1.0.0:", when="@:1.14", type="test") + depends_on("py-pytest", when="@1.15:", type="test") + depends_on("py-hypothesis", when="@1.19:", type="test") + depends_on("py-typing-extensions@4.2:", when="@1.23:", type="test") # Allows you to specify order of BLAS/LAPACK preference # https://github.com/numpy/numpy/pull/13132 - patch('blas-lapack-order.patch', when='@1.15:1.16') + patch("blas-lapack-order.patch", when="@1.15:1.16") # Add Fujitsu Fortran compiler - patch('add_fj_compiler.patch', when='@1.19.3:1.19.5%fj') - patch('add_fj_compiler2.patch', when='@1.19.0:1.19.2%fj') - patch('add_fj_compiler3.patch', when='@1.14.0:1.18.5%fj') - patch('add_fj_compiler4.patch', when='@:1.13.3%fj') + patch("add_fj_compiler.patch", when="@1.19.3:1.19.5%fj") + patch("add_fj_compiler2.patch", when="@1.19.0:1.19.2%fj") + patch("add_fj_compiler3.patch", when="@1.14.0:1.18.5%fj") + patch("add_fj_compiler4.patch", when="@:1.13.3%fj") - patch('check_executables.patch', when='@1.20.0:') - patch('check_executables2.patch', when='@1.19.0:1.19.5') - patch('check_executables3.patch', when='@1.16.0:1.18.5') - patch('check_executables4.patch', when='@1.14.0:1.15.4') - patch('check_executables5.patch', when='@:1.13.3') + patch("check_executables.patch", when="@1.20.0:") + patch("check_executables2.patch", when="@1.19.0:1.19.5") + patch("check_executables3.patch", when="@1.16.0:1.18.5") + patch("check_executables4.patch", when="@1.14.0:1.15.4") + patch("check_executables5.patch", when="@:1.13.3") # Backport bug fix for f2py's define for threading when building with Mingw - patch('https://github.com/numpy/numpy/pull/20881.patch?full_index=1', - sha256='802970a9034d40a8a8f49a03f489d5361d5eabf69249621e6757651448910f1a', - when='@1.20.3:1.22.1') + patch( + "https://github.com/numpy/numpy/pull/20881.patch?full_index=1", + sha256="802970a9034d40a8a8f49a03f489d5361d5eabf69249621e6757651448910f1a", + when="@1.20.3:1.22.1", + ) # Patch to update compiler flags. # See https://github.com/spack/spack/issues/30373 - patch('https://github.com/numpy/numpy/pull/21448.patch?full_index=1', - sha256='e9508c3b3a1e1a24669014a0c1b9f3b009a149ea3886cf711eaef2a32b247fdb', - when='@1.22.0:1.22.3') + patch( + "https://github.com/numpy/numpy/pull/21448.patch?full_index=1", + sha256="e9508c3b3a1e1a24669014a0c1b9f3b009a149ea3886cf711eaef2a32b247fdb", + when="@1.22.0:1.22.3", + ) # version 1.21.0 runs into an infinit loop during printing # (e.g. print(numpy.ones(1000)) when compiled with gcc 11 - conflicts('%gcc@11:', when='@1.21.0') + conflicts("%gcc@11:", when="@1.21.0") # GCC 4.8 is the minimum version that works - conflicts('%gcc@:4.7', msg='GCC 4.8+ required') + conflicts("%gcc@:4.7", msg="GCC 4.8+ required") # NVHPC support added in https://github.com/numpy/numpy/pull/17344 - conflicts('%nvhpc', when='@:1.19') + conflicts("%nvhpc", when="@:1.19") # Newer versions will not build with Intel https://github.com/numpy/numpy/issues/22011 - conflicts('%intel', when='@1.23.0:') + conflicts("%intel", when="@1.23.0:") def url_for_version(self, version): - url = 'https://files.pythonhosted.org/packages/source/n/numpy/numpy-{}.{}' - if version >= Version('1.23'): - ext = 'tar.gz' + url = "https://files.pythonhosted.org/packages/source/n/numpy/numpy-{}.{}" + if version >= Version("1.23"): + ext = "tar.gz" else: - ext = 'zip' + ext = "zip" return url.format(version, ext) def flag_handler(self, name, flags): # -std=c99 at least required, old versions of GCC default to -std=c90 - if self.spec.satisfies('%gcc@:5.1') and name == 'cflags': + if self.spec.satisfies("%gcc@:5.1") and name == "cflags": flags.append(self.compiler.c99_flag) # Check gcc version in use by intel compiler # This will essentially check the system gcc compiler unless a gcc # module is already loaded. - if self.spec.satisfies('%intel') and name == 'cflags': - p1 = subprocess.Popen( - [self.compiler.cc, '-v'], - stderr=subprocess.PIPE - ) + if self.spec.satisfies("%intel") and name == "cflags": + p1 = subprocess.Popen([self.compiler.cc, "-v"], stderr=subprocess.PIPE) p2 = subprocess.Popen( - ['grep', 'compatibility'], - stdin=p1.stderr, - stdout=subprocess.PIPE + ["grep", "compatibility"], stdin=p1.stderr, stdout=subprocess.PIPE ) p1.stderr.close() out, err = p2.communicate() - gcc_version = Version(out.split()[5].decode('utf-8')) - if gcc_version < Version('4.8'): - raise InstallError('The GCC version that the Intel compiler ' - 'uses must be >= 4.8. The GCC in use is ' - '{0}'.format(gcc_version)) - if gcc_version <= Version('5.1'): + gcc_version = Version(out.split()[5].decode("utf-8")) + if gcc_version < Version("4.8"): + raise InstallError( + "The GCC version that the Intel compiler " + "uses must be >= 4.8. The GCC in use is " + "{0}".format(gcc_version) + ) + if gcc_version <= Version("5.1"): flags.append(self.compiler.c99_flag) return (flags, None, None) - @run_before('install') + @run_before("install") def set_blas_lapack(self): # https://numpy.org/devdocs/user/building.html # https://github.com/numpy/numpy/blob/master/site.cfg.example # Skip if no BLAS/LAPACK requested spec = self.spec - if '+blas' not in spec and '+lapack' not in spec: + if "+blas" not in spec and "+lapack" not in spec: return def write_library_dirs(f, dirs): - f.write('library_dirs = {0}\n'.format(dirs)) - if not ((platform.system() == 'Darwin') and - (Version(platform.mac_ver()[0]).up_to(2) == Version( - '10.12'))): - f.write('rpath = {0}\n'.format(dirs)) + f.write("library_dirs = {0}\n".format(dirs)) + if not ( + (platform.system() == "Darwin") + and (Version(platform.mac_ver()[0]).up_to(2) == Version("10.12")) + ): + f.write("rpath = {0}\n".format(dirs)) blas_libs = LibraryList([]) blas_headers = HeaderList([]) - if '+blas' in spec: - blas_libs = spec['blas'].libs - blas_headers = spec['blas'].headers + if "+blas" in spec: + blas_libs = spec["blas"].libs + blas_headers = spec["blas"].headers lapack_libs = LibraryList([]) lapack_headers = HeaderList([]) - if '+lapack' in spec: - lapack_libs = spec['lapack'].libs - lapack_headers = spec['lapack'].headers + if "+lapack" in spec: + lapack_libs = spec["lapack"].libs + lapack_headers = spec["lapack"].headers lapackblas_libs = lapack_libs + blas_libs lapackblas_headers = lapack_headers + blas_headers - blas_lib_names = ','.join(blas_libs.names) - blas_lib_dirs = ':'.join(blas_libs.directories) - blas_header_dirs = ':'.join(blas_headers.directories) + blas_lib_names = ",".join(blas_libs.names) + blas_lib_dirs = ":".join(blas_libs.directories) + blas_header_dirs = ":".join(blas_headers.directories) - lapack_lib_names = ','.join(lapack_libs.names) - lapack_lib_dirs = ':'.join(lapack_libs.directories) - lapack_header_dirs = ':'.join(lapack_headers.directories) + lapack_lib_names = ",".join(lapack_libs.names) + lapack_lib_dirs = ":".join(lapack_libs.directories) + lapack_header_dirs = ":".join(lapack_headers.directories) - lapackblas_lib_names = ','.join(lapackblas_libs.names) - lapackblas_lib_dirs = ':'.join(lapackblas_libs.directories) - lapackblas_header_dirs = ':'.join(lapackblas_headers.directories) + lapackblas_lib_names = ",".join(lapackblas_libs.names) + lapackblas_lib_dirs = ":".join(lapackblas_libs.directories) + lapackblas_header_dirs = ":".join(lapackblas_headers.directories) # Tell numpy where to find BLAS/LAPACK libraries - with open('site.cfg', 'w') as f: - if '^intel-mkl' in spec or \ - '^intel-parallel-studio+mkl' in spec or \ - '^intel-oneapi-mkl' in spec: - f.write('[mkl]\n') + with open("site.cfg", "w") as f: + if ( + "^intel-mkl" in spec + or "^intel-parallel-studio+mkl" in spec + or "^intel-oneapi-mkl" in spec + ): + f.write("[mkl]\n") # FIXME: as of @1.11.2, numpy does not work with separately # specified threading and interface layers. A workaround is a # terribly bad idea to use mkl_rt. In this case Spack will no @@ -257,77 +261,66 @@ class PyNumpy(PythonPackage): # dynamically. From this perspective it is no different from # throwing away RPATH's and using LD_LIBRARY_PATH throughout # Spack. - f.write('libraries = {0}\n'.format('mkl_rt')) + f.write("libraries = {0}\n".format("mkl_rt")) write_library_dirs(f, lapackblas_lib_dirs) - f.write('include_dirs = {0}\n'.format(lapackblas_header_dirs)) + f.write("include_dirs = {0}\n".format(lapackblas_header_dirs)) - if '^blis' in spec or \ - '^amdblis' in spec: - f.write('[blis]\n') - f.write('libraries = {0}\n'.format(blas_lib_names)) + if "^blis" in spec or "^amdblis" in spec: + f.write("[blis]\n") + f.write("libraries = {0}\n".format(blas_lib_names)) write_library_dirs(f, blas_lib_dirs) - f.write('include_dirs = {0}\n'.format(blas_header_dirs)) + f.write("include_dirs = {0}\n".format(blas_header_dirs)) - if '^openblas' in spec: - f.write('[openblas]\n') - f.write('libraries = {0}\n'.format(lapackblas_lib_names)) + if "^openblas" in spec: + f.write("[openblas]\n") + f.write("libraries = {0}\n".format(lapackblas_lib_names)) write_library_dirs(f, lapackblas_lib_dirs) - f.write('include_dirs = {0}\n'.format(lapackblas_header_dirs)) + f.write("include_dirs = {0}\n".format(lapackblas_header_dirs)) - if '^libflame' in spec or \ - '^amdlibflame' in spec: - f.write('[flame]\n') - f.write('libraries = {0}\n'.format(lapack_lib_names)) + if "^libflame" in spec or "^amdlibflame" in spec: + f.write("[flame]\n") + f.write("libraries = {0}\n".format(lapack_lib_names)) write_library_dirs(f, lapack_lib_dirs) - f.write('include_dirs = {0}\n'.format(lapack_header_dirs)) + f.write("include_dirs = {0}\n".format(lapack_header_dirs)) - if '^atlas' in spec: - f.write('[atlas]\n') - f.write('libraries = {0}\n'.format(lapackblas_lib_names)) + if "^atlas" in spec: + f.write("[atlas]\n") + f.write("libraries = {0}\n".format(lapackblas_lib_names)) write_library_dirs(f, lapackblas_lib_dirs) - f.write('include_dirs = {0}\n'.format(lapackblas_header_dirs)) + f.write("include_dirs = {0}\n".format(lapackblas_header_dirs)) - if '^veclibfort' in spec: - f.write('[accelerate]\n') - f.write('libraries = {0}\n'.format(lapackblas_lib_names)) + if "^veclibfort" in spec: + f.write("[accelerate]\n") + f.write("libraries = {0}\n".format(lapackblas_lib_names)) write_library_dirs(f, lapackblas_lib_dirs) - if '^netlib-lapack' in spec or \ - '^cray-libsci' in spec: + if "^netlib-lapack" in spec or "^cray-libsci" in spec: # netlib and Cray require blas and lapack listed # separately so that scipy can find them - if spec.satisfies('+blas'): - f.write('[blas]\n') - f.write('libraries = {0}\n'.format(blas_lib_names)) + if spec.satisfies("+blas"): + f.write("[blas]\n") + f.write("libraries = {0}\n".format(blas_lib_names)) write_library_dirs(f, blas_lib_dirs) - f.write('include_dirs = {0}\n'.format(blas_header_dirs)) - if spec.satisfies('+lapack'): - f.write('[lapack]\n') - f.write('libraries = {0}\n'.format(lapack_lib_names)) + f.write("include_dirs = {0}\n".format(blas_header_dirs)) + if spec.satisfies("+lapack"): + f.write("[lapack]\n") + f.write("libraries = {0}\n".format(lapack_lib_names)) write_library_dirs(f, lapack_lib_dirs) - f.write('include_dirs = {0}\n'.format(lapack_header_dirs)) + f.write("include_dirs = {0}\n".format(lapack_header_dirs)) - if '^fujitsu-ssl2' in spec: - if spec.satisfies('+blas'): - f.write('[blas]\n') - f.write('libraries = {0}\n'.format(spec['blas'].libs.names[0])) + if "^fujitsu-ssl2" in spec: + if spec.satisfies("+blas"): + f.write("[blas]\n") + f.write("libraries = {0}\n".format(spec["blas"].libs.names[0])) write_library_dirs(f, blas_lib_dirs) - f.write('include_dirs = {0}\n'.format(blas_header_dirs)) - f.write( - "extra_link_args = {0}\n".format( - self.spec["blas"].libs.ld_flags - ) - ) - if spec.satisfies('+lapack'): - f.write('[lapack]\n') - f.write('libraries = {0}\n'.format(spec['lapack'].libs.names[0])) + f.write("include_dirs = {0}\n".format(blas_header_dirs)) + f.write("extra_link_args = {0}\n".format(self.spec["blas"].libs.ld_flags)) + if spec.satisfies("+lapack"): + f.write("[lapack]\n") + f.write("libraries = {0}\n".format(spec["lapack"].libs.names[0])) write_library_dirs(f, lapack_lib_dirs) - f.write('include_dirs = {0}\n'.format(lapack_header_dirs)) - f.write( - "extra_link_args = {0}\n".format( - self.spec["lapack"].libs.ld_flags - ) - ) + f.write("include_dirs = {0}\n".format(lapack_header_dirs)) + f.write("extra_link_args = {0}\n".format(self.spec["lapack"].libs.ld_flags)) def setup_build_environment(self, env): # Tell numpy which BLAS/LAPACK libraries we want to use. @@ -335,49 +328,51 @@ class PyNumpy(PythonPackage): # https://numpy.org/devdocs/user/building.html#accelerated-blas-lapack-libraries spec = self.spec # https://numpy.org/devdocs/user/building.html#blas - if 'blas' not in spec: - blas = '' - elif spec['blas'].name == 'intel-mkl' or \ - spec['blas'].name == 'intel-parallel-studio' or \ - spec['blas'].name == 'intel-oneapi-mkl': - blas = 'mkl' - elif spec['blas'].name == 'blis' or \ - spec['blas'].name == 'amdblis': - blas = 'blis' - elif spec['blas'].name == 'openblas': - blas = 'openblas' - elif spec['blas'].name == 'atlas': - blas = 'atlas' - elif spec['blas'].name == 'veclibfort': - blas = 'accelerate' + if "blas" not in spec: + blas = "" + elif ( + spec["blas"].name == "intel-mkl" + or spec["blas"].name == "intel-parallel-studio" + or spec["blas"].name == "intel-oneapi-mkl" + ): + blas = "mkl" + elif spec["blas"].name == "blis" or spec["blas"].name == "amdblis": + blas = "blis" + elif spec["blas"].name == "openblas": + blas = "openblas" + elif spec["blas"].name == "atlas": + blas = "atlas" + elif spec["blas"].name == "veclibfort": + blas = "accelerate" else: - blas = 'blas' + blas = "blas" - env.set('NPY_BLAS_ORDER', blas) + env.set("NPY_BLAS_ORDER", blas) # https://numpy.org/devdocs/user/building.html#lapack - if 'lapack' not in spec: - lapack = '' - elif spec['lapack'].name == 'intel-mkl' or \ - spec['lapack'].name == 'intel-parallel-studio' or \ - spec['lapack'].name == 'intel-oneapi-mkl': - lapack = 'mkl' - elif spec['lapack'].name == 'openblas': - lapack = 'openblas' - elif spec['lapack'].name == 'libflame' or \ - spec['lapack'].name == 'amdlibflame': - lapack = 'flame' - elif spec['lapack'].name == 'atlas': - lapack = 'atlas' - elif spec['lapack'].name == 'veclibfort': - lapack = 'accelerate' + if "lapack" not in spec: + lapack = "" + elif ( + spec["lapack"].name == "intel-mkl" + or spec["lapack"].name == "intel-parallel-studio" + or spec["lapack"].name == "intel-oneapi-mkl" + ): + lapack = "mkl" + elif spec["lapack"].name == "openblas": + lapack = "openblas" + elif spec["lapack"].name == "libflame" or spec["lapack"].name == "amdlibflame": + lapack = "flame" + elif spec["lapack"].name == "atlas": + lapack = "atlas" + elif spec["lapack"].name == "veclibfort": + lapack = "accelerate" else: - lapack = 'lapack' + lapack = "lapack" - env.set('NPY_LAPACK_ORDER', lapack) + env.set("NPY_LAPACK_ORDER", lapack) - @run_after('install') + @run_after("install") @on_package_attributes(run_tests=True) def install_test(self): - with working_dir('spack-test', create=True): - python('-c', 'import numpy; numpy.test("full", verbose=2)') + with working_dir("spack-test", create=True): + python("-c", 'import numpy; numpy.test("full", verbose=2)') |