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Diffstat (limited to 'var/spack/repos/builtin/packages/py-pyani/package.py')
| -rw-r--r-- | var/spack/repos/builtin/packages/py-pyani/package.py | 36 |
1 files changed, 36 insertions, 0 deletions
diff --git a/var/spack/repos/builtin/packages/py-pyani/package.py b/var/spack/repos/builtin/packages/py-pyani/package.py new file mode 100644 index 0000000000..b17125eddb --- /dev/null +++ b/var/spack/repos/builtin/packages/py-pyani/package.py @@ -0,0 +1,36 @@ +# Copyright 2013-2018 Lawrence Livermore National Security, LLC and other +# Spack Project Developers. See the top-level COPYRIGHT file for details. +# +# SPDX-License-Identifier: (Apache-2.0 OR MIT) + +from spack import * + + +class PyPyani(PythonPackage): + """pyani is a Python3 module that provides support for calculating + average nucleotide identity (ANI) and related measures for whole genome + comparisons, and rendering relevant graphical summary output. Where + available, it takes advantage of multicore systems, and can integrate + with SGE/OGE-type job schedulers for the sequence comparisons.""" + + homepage = "http://widdowquinn.github.io/pyani" + url = "https://pypi.io/packages/source/p/pyani/pyani-0.2.7.tar.gz" + + version('0.2.7', '239ba630d375a81c35b7c60fb9bec6fa') + version('0.2.6', 'd5524b9a3c62c36063ed474ea95785c9') + + depends_on('python@3.5:') + depends_on('py-setuptools', type='build') + depends_on('py-matplotlib', type=('build', 'run')) + depends_on('py-seaborn', type=('build', 'run')) + + # Required for ANI analysis + depends_on('py-biopython', type=('build', 'run')) + depends_on('py-pandas', type=('build', 'run')) + depends_on('py-scipy', type=('build', 'run')) + + # Required for ANIb analysis + depends_on('blast-plus~python', type='run') + + # Required for ANIm analysis + depends_on('mummer', type='run') |